Conservation of cofitness between GFF4773 and GFF3567 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4773 DNA mismatch repair protein MutS 1.0 GFF3567 Pyruvate kinase (EC 2.7.1.40) 0.72 17
Escherichia fergusonii Becca 0.93 EFB2_01179 DNA mismatch repair protein MutS 0.96 EFB2_02316 Pyruvate kinase I low > 86
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2829 DNA mismatch repair protein MutS 0.97 EX28DRAFT_1679 pyruvate kinase low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_03619 DNA mismatch repair protein MutS 0.97 MPMX20_01951 Pyruvate kinase I low > 85
Escherichia coli ECRC98 0.92 JDDGAC_24190 mutS DNA mismatch repair protein MutS 0.96 JDDGAC_01865 pykF pyruvate kinase PykF — —
Escherichia coli ECRC101 0.92 MCAODC_11050 mutS DNA mismatch repair protein MutS 0.96 MCAODC_18120 pykF pyruvate kinase PykF — —
Escherichia coli ECRC99 0.92 KEDOAH_07610 mutS DNA mismatch repair protein MutS 0.96 KEDOAH_00820 pykF pyruvate kinase PykF — —
Escherichia coli ECOR27 0.92 NOLOHH_12370 mutS DNA mismatch repair protein MutS 0.96 NOLOHH_17810 pykF pyruvate kinase PykF low > 76
Escherichia coli ECRC102 0.92 NIAGMN_18295 mutS DNA mismatch repair protein MutS 0.96 NIAGMN_00775 pykF pyruvate kinase PykF — —
Escherichia coli ECRC100 0.92 OKFHMN_20525 mutS DNA mismatch repair protein MutS 0.96 OKFHMN_27290 pykF pyruvate kinase PykF — —
Escherichia coli Nissle 1917 0.92 ECOLIN_RS15275 DNA mismatch repair protein MutS 0.96 ECOLIN_RS09375 pyruvate kinase PykF low > 55
Escherichia coli ECRC62 0.92 BNILDI_10920 mutS DNA mismatch repair protein MutS 0.96 BNILDI_16600 pykF pyruvate kinase PykF low > 75
Klebsiella pneumoniae MKP103 0.92 KDGMDA_03170 DNA mismatch repair protein MutS 0.97 KDGMDA_24130 pyruvate kinase PykF low > 95
Escherichia coli ECOR38 0.92 HEPCGN_19705 mutS DNA mismatch repair protein MutS 0.96 HEPCGN_05675 pykF pyruvate kinase PykF low > 88
Escherichia coli BL21 0.92 ECD_02583 methyl-directed mismatch repair protein 0.96 ECD_01645 pyruvate kinase I low > 61
Escherichia coli BW25113 0.92 b2733 mutS DNA mismatch repair protein (NCBI) 0.96 b1676 pykF pyruvate kinase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.92 OHPLBJKB_01000 DNA mismatch repair protein MutS 0.96 OHPLBJKB_02048 Pyruvate kinase I low > 74
Klebsiella michiganensis M5al 0.92 BWI76_RS22600 DNA mismatch repair protein MutS 0.96 BWI76_RS16960 pyruvate kinase — —
Pectobacterium carotovorum WPP14 0.85 HER17_RS16220 DNA mismatch repair protein MutS 0.86 HER17_RS08960 pyruvate kinase PykF low > 75
Serratia liquefaciens MT49 0.85 IAI46_03800 DNA mismatch repair protein MutS 0.89 IAI46_11185 pyruvate kinase PykF low > 87
Dickeya dadantii 3937 0.84 DDA3937_RS05230 DNA mismatch repair protein MutS 0.87 DDA3937_RS12740 pyruvate kinase PykF low > 74
Dickeya dianthicola ME23 0.84 DZA65_RS05570 DNA mismatch repair protein MutS 0.86 DZA65_RS13270 pyruvate kinase PykF low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS05230 DNA mismatch repair protein MutS 0.86 HGI48_RS12805 pyruvate kinase PykF low > 71
Erwinia tracheiphila SCR3 0.84 LU632_RS06485 mutS DNA mismatch repair protein MutS 0.87 LU632_RS11145 pykF pyruvate kinase PykF low > 73
Erwinia tracheiphila HP pepo 2.2 0.83 IJEDHG_17505 mutS DNA mismatch repair protein MutS 0.87 IJEDHG_25210 pykF pyruvate kinase PykF low > 61
Erwinia amylovora T8 0.83 OLJFJH_09385 DNA mismatch repair protein MutS 0.87 OLJFJH_14555 pyruvate kinase PykF low > 58
Rahnella sp. WP5 0.83 EX31_RS07820 DNA mismatch repair protein MutS 0.89 EX31_RS13870 pyruvate kinase PykF low > 89
Pantoea agglomerans CFBP13505 P0401 0.82 PagCFBP13505_RS16730 DNA mismatch repair protein MutS 0.88 PagCFBP13505_RS17750 pyruvate kinase PykF low > 74
Pantoea sp. MT58 0.82 IAI47_04240 DNA mismatch repair protein MutS 0.88 IAI47_10840 pyruvate kinase PykF low > 76
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_02840 DNA mismatch repair protein MutS 0.77 CSW01_02575 pyruvate kinase PykF — —
Pseudomonas aeruginosa PUPa3 0.58 DQ20_RS42250 mutS;go_function=ATP DNA mismatch repair protein MutS 0.31 DQ20_RS47375 pyk;go_component=cytoplasm|0005737||IEA;go_function=pyruvate pyruvate kinase low > 101
Pseudomonas aeruginosa MRSN321 0.58 DY961_RS14875 mutS;go_function=ATP DNA mismatch repair protein MutS 0.31 DY961_RS05415 pyk;go_component=cytoplasm|0005737||IEA;go_function=pyruvate pyruvate kinase low > 100
Pseudomonas aeruginosa PA14 0.58 IKLFDK_18480 DNA mismatch repair protein MutS 0.31 IKLFDK_07135 pyruvate kinase low > 98
Pseudomonas sp. SVBP6 0.57 COO64_RS19805 mutS DNA mismatch repair protein MutS 0.31 COO64_RS25865 pyk pyruvate kinase low > 93
Pseudomonas sp. RS175 0.57 PFR28_00429 DNA mismatch repair protein MutS 0.31 PFR28_03114 Pyruvate kinase low > 88
Pseudomonas simiae WCS417 0.57 PS417_05680 DNA mismatch repair protein MutS 0.31 PS417_08790 pyruvate kinase low > 88
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_05875 DNA mismatch repair protein MutS 0.31 AO356_19600 pyruvate kinase low > 104
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3035 DNA mismatch repair protein MutS 0.30 Pf6N2E2_5835 Pyruvate kinase (EC 2.7.1.40) low > 103
Pseudomonas putida KT2440 0.57 PP_1626 DNA mismatch repair protein MutS 0.32 PP_4301 Pyruvate kinase low > 96
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_16625 DNA mismatch repair protein MutS 0.31 AO353_01940 pyruvate kinase low > 101
Pseudomonas orientalis W4I3 0.57 QF045_RS08605 DNA mismatch repair protein MutS 0.31 QF045_RS11490 pyruvate kinase low > 93
Pseudomonas sp. DMC3 0.57 GFF2086 DNA mismatch repair protein MutS 0.32 GFF2499 Pyruvate kinase low > 89
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_3117 DNA mismatch repair protein MutS 0.31 Pf1N1B4_3657 Pyruvate kinase (EC 2.7.1.40) low > 87
Pseudomonas fluorescens SBW25 0.57 PFLU_RS05765 DNA mismatch repair protein MutS 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS05765 DNA mismatch repair protein MutS 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_4672 DNA mismatch repair protein MutS 0.31 PfGW456L13_4299 Pyruvate kinase (EC 2.7.1.40) low > 87
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS06285 DNA mismatch repair protein MutS 0.33 RR42_RS19870 pyruvate kinase low > 128
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS14920 DNA mismatch repair protein MutS 0.32 RALBFv3_RS17015 pyruvate kinase low > 76
Castellaniella sp019104865 MT123 0.45 ABCV34_RS00270 DNA mismatch repair protein MutS 0.32 ABCV34_RS12115 pyruvate kinase low > 48
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS10580 DNA mismatch repair protein MutS 0.33 ABZR88_RS01590 pyruvate kinase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.36 CA264_18545 DNA mismatch repair protein MutS 0.31 CA264_00725 pyruvate kinase low > 74
Bacteroides ovatus ATCC 8483 0.36 BACOVA_02824 DNA mismatch repair protein MutS 0.36 BACOVA_02121 pyruvate kinase low > 96
Bacteroides thetaiotaomicron VPI-5482 0.35 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) 0.35 BT2841 pyruvate kinase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS01980 DNA mismatch repair protein MutS 0.35 HMPREF1181_RS01240 pyruvate kinase low > 56
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS05500 DNA mismatch repair protein MutS 0.34 ABI39_RS07010 pyruvate kinase low > 72
Cellulophaga baltica 18 0.35 M666_RS07920 DNA mismatch repair protein MutS 0.34 M666_RS04070 pyruvate kinase low > 67
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS11435 DNA mismatch repair protein MutS 0.34 HMPREF1058_RS09670 pyruvate kinase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_0960 DNA mismatch repair protein MutS 0.35 Echvi_2317 pyruvate kinase low > 79
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS06455 DNA mismatch repair protein MutS 0.34 HMPREF1078_RS04695 pyruvate kinase low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS08220 DNA mismatch repair protein MutS 0.33 CA265_RS18740 pyruvate kinase — —
Rhodospirillum rubrum S1H 0.34 Rru_A3541 MutS 1 protein (NCBI) 0.32 Rru_A2465 Pyruvate kinase (NCBI) — —
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_0355 DNA mismatch repair protein MutS (RefSeq) 0.28 DvMF_0965 pyruvate kinase (RefSeq) low > 51
Azospirillum sp. SherDot2 0.33 MPMX19_00908 DNA mismatch repair protein MutS 0.33 MPMX19_04074 Pyruvate kinase low > 112
Fusobacterium nucleatum SB010 0.33 HUW76_04335 DNA mismatch repair protein MutS 0.62 HUW76_00910 pyruvate kinase PykF — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS02125 DNA mismatch repair protein MutS 0.31 AZOBR_RS06845 pyruvate kinase low > 97
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3784 DNA mismatch repair protein MutS 0.30 Ga0059261_0685 pyruvate kinase low > 68
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU1649 mutS DNA mismatch repair protein MutS (TIGR) 0.27 DVU2514 pyk pyruvate kinase (TIGR) low > 55
Xanthobacter sp. DMC5 0.32 GFF3848 DNA mismatch repair protein MutS 0.29 GFF1958 Pyruvate kinase — —
Bosea sp. OAE506 0.30 ABIE41_RS03650 DNA mismatch repair protein MutS 0.31 ABIE41_RS06285 pyruvate kinase low > 77
Sphingobium sp. HT1-2 0.30 GFF4191 DNA mismatch repair protein MutS 0.28 GFF487 Pyruvate kinase (EC 2.7.1.40) 0.55 21
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS12110 DNA mismatch repair protein MutS 0.26 A4249_RS02440 pyruvate kinase — —
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_00012 DNA mismatch repair protein MutS 0.28 CCNA_02130 pyruvate kinase low > 67
Caulobacter crescentus NA1000 0.28 CCNA_00012 DNA mismatch repair protein MutS 0.28 CCNA_02130 pyruvate kinase low > 66

Not shown: 47 genomes with orthologs for GFF4773 only; 4 genomes with orthologs for GFF3567 only