Conservation of cofitness between GFF2198 and GFF3397 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2198 NADP-dependent malic enzyme (EC 1.1.1.40) 1.0 GFF3397 Transcription-repair coupling factor 0.59 17
Escherichia coli ECRC98 0.95 JDDGAC_25950 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.95 OKFHMN_22005 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECOR38 0.95 HEPCGN_21175 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia fergusonii Becca 0.95 EFB2_01425 NADP-dependent malic enzyme 0.96 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC102 0.95 NIAGMN_19775 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.95 MCAODC_12535 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli ECRC62 0.95 BNILDI_12495 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia coli ECOR27 0.95 NOLOHH_13685 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 NOLOHH_20995 mfd transcription-repair coupling factor low > 57
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0198 Malic enzyme 0.94 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Escherichia coli BW25113 0.95 b2463 maeB malic enzyme (NCBI) 0.96 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_01268 NADP-dependent malic enzyme 0.96 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia coli ECRC99 0.95 KEDOAH_06215 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.96 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli BL21 0.95 ECD_02354 malic enzyme: putative oxidoreductase/phosphotransacetylase 0.96 ECD_01110 transcription-repair coupling factor low > 60
Enterobacter sp. TBS_079 0.94 MPMX20_03324 NADP-dependent malic enzyme 0.93 MPMX20_01795 Transcription-repair-coupling factor low > 85
Klebsiella michiganensis M5al 0.94 BWI76_RS20830 bifunctional malic enzyme oxidoreductase/phosphotransacetylase 0.94 BWI76_RS11205 transcription-repair coupling factor low > 92
Serratia liquefaciens MT49 0.87 IAI46_18585 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.83 IAI46_10320 transcription-repair coupling factor low > 86
Pectobacterium carotovorum WPP14 0.87 HER17_RS17280 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.84 HER17_RS08775 transcription-repair coupling factor low > 75
Rahnella sp. WP5 0.87 EX31_RS20275 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.82 EX31_RS24520 transcription-repair coupling factor low > 89
Dickeya dadantii 3937 0.86 DDA3937_RS04355 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.82 DDA3937_RS13000 transcription-repair coupling factor low > 74
Dickeya dianthicola ME23 0.85 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.82 DZA65_RS13530 transcription-repair coupling factor low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS04345 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.82 HGI48_RS13065 transcription-repair coupling factor 0.61 36
Dechlorosoma suillum PS 0.63 Dsui_0543 malic enzyme 0.44 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Paraburkholderia graminis OAS925 0.63 ABIE53_000015 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) 0.46 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS18310 malic enzyme 0.45 BPHYT_RS09290 helicase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) 0.45 H281DRAFT_00880 transcription-repair coupling factor low > 103
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS28455 NADP-dependent malic enzyme 0.45 QEN71_RS22060 transcription-repair coupling factor low > 153
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS16825 NADP-dependent malic enzyme oxidoreductase 0.46 HSERO_RS15180 transcription-repair coupling factor low > 78
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS03260 NADP-dependent malic enzyme 0.45 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.62 UW163_RS10465 NADP-dependent malic enzyme 0.45 UW163_RS14755 transcription-repair coupling factor — —
Ralstonia solanacearum GMI1000 0.62 RS_RS10650 NADP-dependent malic enzyme 0.46 RS_RS08275 transcription-repair coupling factor low > 80
Ralstonia solanacearum PSI07 0.62 RPSI07_RS14050 NADP-dependent malic enzyme 0.45 RPSI07_RS16040 transcription-repair coupling factor low > 81
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS05210 malic enzyme 0.44 RR42_RS07845 transcription-repair coupling factor low > 128
Acinetobacter radioresistens SK82 0.61 MPMX26_01000 NADP-dependent malic enzyme 0.47 MPMX26_01319 Transcription-repair-coupling factor low > 36
Variovorax sp. OAS795 0.61 ABID97_RS22340 NADP-dependent malic enzyme 0.45 ABID97_RS17285 transcription-repair coupling factor low > 91
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS01565 NADP-dependent malic enzyme 0.46 ABZR87_RS13240 transcription-repair coupling factor low > 80
Variovorax sp. SCN45 0.60 GFF1796 NADP-dependent malic enzyme (EC 1.1.1.40) 0.45 GFF412 Transcription-repair coupling factor low > 127
Castellaniella sp019104865 MT123 0.60 ABCV34_RS01715 NADP-dependent malic enzyme 0.43 ABCV34_RS08660 transcription-repair coupling factor low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF3306 NADP-dependent malic enzyme (EC 1.1.1.40) 0.44 GFF4934 Transcription-repair coupling factor low > 90
Magnetospirillum magneticum AMB-1 0.60 AMB_RS03695 NADP-dependent malic enzyme 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Lysobacter sp. OAE881 0.60 ABIE51_RS18820 NADP-dependent malic enzyme 0.50 ABIE51_RS14320 transcription-repair coupling factor low > 62
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1079 NADP-dependent malic enzyme (EC 1.1.1.40) 0.45 Ac3H11_328 Transcription-repair coupling factor low > 79
Azospirillum sp. SherDot2 0.59 MPMX19_04254 NADP-dependent malic enzyme 0.32 MPMX19_00876 Transcription-repair-coupling factor low > 112
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.1035.1 NADP-dependent malic enzyme (EC 1.1.1.40) 0.47 Xcc-8004.1775.1 Transcription-repair coupling factor — —
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_12705 pta NADP-dependent malic enzyme 0.50 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS12415 NADP-dependent malic enzyme 0.51 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS11170 NADP-dependent malic enzyme 0.50 LRK54_RS02040 transcription-repair coupling factor low > 59
Rhodanobacter denitrificans MT42 0.58 LRK55_RS10875 NADP-dependent malic enzyme 0.50 LRK55_RS01815 transcription-repair coupling factor — —
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_02704 NADP-dependent malic enzyme 0.32 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Caulobacter crescentus NA1000 0.57 CCNA_02704 NADP-dependent malic enzyme 0.32 CCNA_01920 transcription-repair coupling factor Mfd — —
Rhizobium sp. OAE497 0.55 ABIE40_RS10450 NADP-dependent malic enzyme 0.31 ABIE40_RS09310 transcription-repair coupling factor low > 107
Sinorhizobium meliloti 1021 0.55 SMc00169 malic enzyme 0.32 SMc04450 transcription-repair coupling factor 0.38 98
Phaeobacter inhibens DSM 17395 0.54 PGA1_c11910 Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) (from data) 0.32 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Agrobacterium fabrum C58 0.54 Atu1652 NADP-dependent malic enzyme 0.31 Atu1778 transcription-repair coupling factor — —
Bosea sp. OAE506 0.52 ABIE41_RS21715 NADP-dependent malic enzyme 0.32 ABIE41_RS15825 transcription-repair coupling factor low > 77
Dinoroseobacter shibae DFL-12 0.52 Dshi_0826 malic protein NAD-binding (RefSeq) 0.32 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.51 TX73_015740 NADP-dependent malic enzyme 0.33 TX73_013805 transcription-repair coupling factor low > 86
Rhodospirillum rubrum S1H 0.42 Rru_A3542 malate dehydrogenase (NCBI) 0.32 Rru_A1726 Transcription-repair coupling factor (NCBI) low > 58
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_3786 Malic enzyme 0.32 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS13295 NADP-dependent malic enzyme 0.32 A4249_RS04775 transcription-repair coupling factor — —

Not shown: 12 genomes with orthologs for GFF2198 only; 27 genomes with orthologs for GFF3397 only