Conservation of cofitness between GFF1504 and GFF3397 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1504 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 1.0 GFF3397 Transcription-repair coupling factor 0.91 1
Escherichia coli ECRC100 0.88 OKFHMN_18155 deaD ATP-dependent RNA helicase DeaD 0.96 OKFHMN_03470 mfd transcription-repair coupling factor low > 79
Escherichia coli ECRC98 0.88 JDDGAC_21780 deaD ATP-dependent RNA helicase DeaD 0.96 JDDGAC_07130 mfd transcription-repair coupling factor low > 87
Escherichia coli ECRC102 0.88 NIAGMN_15915 deaD ATP-dependent RNA helicase DeaD 0.96 NIAGMN_24360 mfd transcription-repair coupling factor low > 80
Escherichia coli ECRC99 0.88 KEDOAH_09995 deaD ATP-dependent RNA helicase DeaD 0.96 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.88 MCAODC_08675 deaD ATP-dependent RNA helicase DeaD 0.96 MCAODC_22830 mfd transcription-repair coupling factor low > 87
Escherichia coli BW25113 0.87 b3162 deaD inducible ATP-independent RNA helicase (VIMSS) 0.96 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_00538 ATP-dependent RNA helicase DeaD 0.96 OHPLBJKB_02552 Transcription-repair-coupling factor low > 74
Escherichia fergusonii Becca 0.87 EFB2_00661 ATP-dependent RNA helicase DeaD 0.96 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC62 0.87 BNILDI_01580 deaD ATP-dependent RNA helicase DeaD 0.96 BNILDI_19160 mfd transcription-repair coupling factor low > 75
Escherichia coli BL21 0.87 ECD_03029 ATP-dependent RNA helicase 0.96 ECD_01110 transcription-repair coupling factor low > 61
Escherichia coli ECOR27 0.87 NOLOHH_09955 deaD ATP-dependent RNA helicase DeaD 0.96 NOLOHH_20995 mfd transcription-repair coupling factor low > 76
Escherichia coli ECOR38 0.87 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD 0.96 HEPCGN_24015 mfd transcription-repair coupling factor low > 88
Klebsiella michiganensis M5al 0.86 BWI76_RS25055 DEAD/DEAH family ATP-dependent RNA helicase 0.94 BWI76_RS11205 transcription-repair coupling factor — —
Enterobacter sp. TBS_079 0.86 MPMX20_04066 ATP-dependent RNA helicase DeaD 0.93 MPMX20_01795 Transcription-repair-coupling factor low > 85
Klebsiella pneumoniae MKP103 0.85 KDGMDA_05860 DEAD/DEAH family ATP-dependent RNA helicase 0.92 KDGMDA_18800 transcription-repair coupling factor low > 95
Enterobacter asburiae PDN3 0.85 EX28DRAFT_3211 Superfamily II DNA and RNA helicases 0.94 EX28DRAFT_1816 transcription-repair coupling factor (mfd) — —
Rahnella sp. WP5 0.81 EX31_RS08510 DEAD/DEAH family ATP-dependent RNA helicase 0.82 EX31_RS24520 transcription-repair coupling factor low > 89
Serratia liquefaciens MT49 0.80 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase 0.83 IAI46_10320 transcription-repair coupling factor low > 87
Dickeya dadantii 3937 0.80 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase 0.82 DDA3937_RS13000 transcription-repair coupling factor low > 74
Pectobacterium carotovorum WPP14 0.79 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase 0.84 HER17_RS08775 transcription-repair coupling factor low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase 0.82 HGI48_RS13065 transcription-repair coupling factor 0.52 36
Dickeya dianthicola ME23 0.79 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase 0.82 DZA65_RS13530 transcription-repair coupling factor — —
Pantoea sp. MT58 0.79 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase 0.83 IAI47_11975 transcription-repair coupling factor low > 76
Erwinia tracheiphila SCR3 0.78 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase 0.85 LU632_RS14730 mfd transcription-repair coupling factor — —
Erwinia tracheiphila HP pepo 2.2 0.78 IJEDHG_13975 DEAD/DEAH family ATP-dependent RNA helicase 0.85 IJEDHG_00560 mfd transcription-repair coupling factor — —
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13505_RS09085 DEAD/DEAH family ATP-dependent RNA helicase 0.82 PagCFBP13505_RS19410 transcription-repair coupling factor low > 74
Erwinia amylovora T8 0.76 OLJFJH_07275 DEAD/DEAH family ATP-dependent RNA helicase 0.85 OLJFJH_15445 transcription-repair coupling factor low > 58
Shewanella loihica PV-4 0.47 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) 0.56 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Shewanella amazonensis SB2B 0.46 Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Dechlorosoma suillum PS 0.46 Dsui_1351 DNA/RNA helicase, superfamily II 0.44 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Alteromonas macleodii MIT1002 0.45 MIT1002_00666 Cold-shock DEAD box protein A 0.58 MIT1002_01646 Transcription-repair-coupling factor low > 70
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_1850 ATP-dependent RNA helicase CsdA (EC 5.99.1.-) 0.51 B158DRAFT_1800 transcription-repair coupling factor low > 40
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.47 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Shewanella sp. ANA-3 0.44 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_09705 ATP-dependent RNA helicase 0.50 OKGIIK_09105 mfd transcription-repair coupling factor low > 53
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS08990 DEAD/DEAH box helicase 0.51 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter denitrificans MT42 0.43 LRK55_RS02405 DEAD/DEAH box helicase 0.50 LRK55_RS01815 transcription-repair coupling factor low > 63
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS02650 DEAD/DEAH box helicase 0.50 LRK54_RS02040 transcription-repair coupling factor low > 59
Shewanella oneidensis MR-1 0.43 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Rhodanobacter sp000427505 FW510-R12 0.43 LRK53_RS07300 DEAD/DEAH box helicase 0.50 LRK53_RS08005 transcription-repair coupling factor low > 59
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase 0.64 CSW01_09445 transcription-repair coupling factor low > 62
Pseudomonas segetis P6 0.37 MPMX49_02165 ATP-dependent RNA helicase DeaD 0.54 MPMX49_01844 Transcription-repair-coupling factor 0.39 13
Pseudomonas sp. S08-1 0.37 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) 0.54 OH686_21990 transcription-repair coupling factor low > 80
Pseudomonas stutzeri RCH2 0.37 Psest_1804 Superfamily II DNA and RNA helicases 0.54 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Pseudomonas sp. RS175 0.37 PFR28_00980 ATP-dependent RNA helicase DeaD 0.53 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_03110 RNA helicase 0.53 AO356_02270 transcription-repair coupling factor — —
Pseudomonas putida KT2440 0.36 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD 0.53 PP_2148 transcription-repair coupling factor — —
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_2450 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.53 Pf6N2E2_2278 Transcription-repair coupling factor — —
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.53 PfGW456L13_4027 Transcription-repair coupling factor — —
Pseudomonas lactucae CFBP13502 0.36 GEMAOFIL_01840 ATP-dependent RNA helicase DeaD 0.53 GEMAOFIL_01659 Transcription-repair-coupling factor — —
Pseudomonas sp. BP01 0.36 JOY50_RS17005 DEAD/DEAH box helicase 0.53 JOY50_RS25100 mfd transcription-repair coupling factor low > 84
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_265 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) 0.53 Pf1N1B4_3916 Transcription-repair coupling factor — —
Pseudomonas orientalis W4I3 0.36 QF045_RS11260 DEAD/DEAH box helicase 0.53 QF045_RS10280 transcription-repair coupling factor low > 93
Pseudomonas fluorescens SBW25 0.36 PFLU_RS08490 DEAD/DEAH box helicase 0.53 PFLU_RS07710 transcription-repair coupling factor — —
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS08490 DEAD/DEAH box helicase 0.53 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_19130 RNA helicase 0.53 AO353_00435 transcription-repair coupling factor — —
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal 0.54 Psyr_1896 transcription-repair coupling factor — —
Pseudomonas simiae WCS417 0.36 PS417_08540 RNA helicase 0.53 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal 0.54 Psyr_1896 transcription-repair coupling factor — —
Pseudomonas sp. DMC3 0.36 GFF4601 ATP-dependent RNA helicase DeaD 0.53 GFF1285 Transcription-repair-coupling factor — —
Pseudomonas aeruginosa PUPa3 0.35 DQ20_RS32800 DEAD/DEAH box helicase 0.55 DQ20_RS33625 mfd;go_function=nucleic transcription-repair coupling factor low > 101
Pseudomonas aeruginosa MRSN321 0.35 DY961_RS02795 DEAD/DEAH box helicase 0.55 DY961_RS01955 mfd;go_function=nucleic transcription-repair coupling factor low > 100
Pseudomonas aeruginosa PA14 0.35 IKLFDK_14425 ATP-dependent RNA helicase 0.55 IKLFDK_15275 transcription-repair coupling factor 0.46 1
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) 0.26 DvMF_0285 transcription-repair coupling factor (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.31 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) 0.27 DVU1903 mfd transcription-repair coupling factor (TIGR) low > 55

Not shown: 14 genomes with orthologs for GFF1504 only; 40 genomes with orthologs for GFF3397 only