Conservation of cofitness between PGA1_c14770 and PGA1_c34250 in Phaeobacter inhibens DSM 17395

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c14770 tRNA-dihydrouridine synthase DusB 1.0 PGA1_c34250 AMP nucleosidase Amn 0.46 8
Dinoroseobacter shibae DFL-12 0.58 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq) 0.75 Dshi_3289 AMP nucleosidase (RefSeq) — —
Agrobacterium fabrum C58 0.49 Atu1444 nitrogen regulation protein 0.65 Atu1006 AMP nucleosidase — —
Sinorhizobium meliloti 1021 0.48 SMc01041 NIFR3-like protein 0.64 SMc02386 AMP nucleosidase — —
Rhizobium sp. OAE497 0.47 ABIE40_RS09080 tRNA dihydrouridine synthase DusB 0.63 ABIE40_RS05905 AMP nucleosidase low > 107
Azospirillum brasilense Sp245 0.44 AZOBR_RS14420 tRNA-dihydrouridine synthase 0.55 AZOBR_RS14175 AMP nucleosidase low > 97
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_0140 tRNA-U20-dihydrouridine synthase 0.40 Ga0059261_4012 AMP nucleosidase low > 68
Azospirillum sp. SherDot2 0.42 MPMX19_01110 tRNA-dihydrouridine synthase B 0.55 MPMX19_00597 AMP nucleosidase low > 112
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.59 QEN71_RS17860 AMP nucleosidase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.59 H281DRAFT_06027 AMP nucleosidase low > 103
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.48 ABZR87_RS17145 AMP nucleosidase low > 80
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS04810 tRNA dihydrouridine synthase DusB 0.41 A4249_RS14550 AMP nucleosidase low > 48
Ralstonia solanacearum PSI07 0.39 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.48 RPSI07_RS00695 AMP nucleosidase low > 81
Ralstonia solanacearum UW163 0.39 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.48 UW163_RS23015 AMP nucleosidase — —
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.48 RALBFv3_RS22470 AMP nucleosidase low > 76
Ralstonia solanacearum GMI1000 0.39 RS_RS02515 tRNA dihydrouridine synthase DusB 0.48 RS_RS18175 AMP nucleosidase low > 80
Variovorax sp. OAS795 0.39 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.52 ABID97_RS00880 AMP nucleosidase low > 91
Caulobacter crescentus NA1000 0.39 CCNA_01813 tRNA-dihydrouridine synthase 0.40 CCNA_00265 AMP nucleosidase — —
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_01813 tRNA-dihydrouridine synthase 0.40 CCNA_00265 AMP nucleosidase — —
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.59 BPHYT_RS33635 AMP nucleosidase low > 109
Variovorax sp. SCN45 0.38 GFF2144 tRNA-dihydrouridine synthase DusB 0.52 GFF3583 AMP nucleosidase (EC 3.2.2.4) 0.72 77
Serratia liquefaciens MT49 0.38 IAI46_22775 tRNA dihydrouridine synthase DusB 0.41 IAI46_16720 AMP nucleosidase low > 86
Pseudomonas sp. S08-1 0.38 OH686_07610 tRNA-dihydrouridine synthase DusB 0.39 OH686_08855 AMP nucleosidase low > 80
Castellaniella sp019104865 MT123 0.38 ABCV34_RS07960 tRNA dihydrouridine synthase DusB 0.61 ABCV34_RS12200 AMP nucleosidase low > 48
Pseudomonas stutzeri RCH2 0.38 Psest_1016 putative TIM-barrel protein, nifR3 family 0.39 Psest_0542 AMP nucleosidase low > 67
Escherichia coli BW25113 0.37 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.41 b1982 amn AMP nucleosidase (NCBI) low > 76
Rahnella sp. WP5 0.37 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.40 EX31_RS17755 AMP nucleosidase low > 89
Escherichia coli ECRC62 0.37 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.41 BNILDI_14920 amn AMP nucleosidase — —
Klebsiella michiganensis M5al 0.37 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.40 BWI76_RS18545 AMP nucleosidase — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.41 ECOLIN_RS11455 AMP nucleosidase — —
Escherichia coli ECRC101 0.37 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.41 MCAODC_20210 amn AMP nucleosidase — —
Escherichia fergusonii Becca 0.37 EFB2_00564 tRNA-dihydrouridine synthase B 0.41 EFB2_01930 AMP nucleosidase low > 86
Escherichia coli ECRC101 0.37 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.41 OKFHMN_25180 amn AMP nucleosidase — —
Escherichia coli ECRC102 0.37 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.41 NIAGMN_22685 amn AMP nucleosidase — —
Escherichia coli BL21 0.37 ECD_03118 tRNA-dihydrouridine synthase B 0.41 ECD_01894 AMP nucleosidase low > 60
Escherichia coli ECOR38 0.37 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.41 HEPCGN_03515 amn AMP nucleosidase low > 85
Escherichia coli ECOR27 0.37 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.41 NOLOHH_16125 amn AMP nucleosidase low > 57
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.54 HSERO_RS19630 AMP nucleosidase low > 78
Enterobacter sp. TBS_079 0.37 MPMX20_04169 tRNA-dihydrouridine synthase B 0.41 MPMX20_02987 AMP nucleosidase low > 85
Dickeya dianthicola 67-19 0.37 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.42 HGI48_RS06920 AMP nucleosidase low > 71
Pectobacterium carotovorum WPP14 0.37 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.40 HER17_RS14005 AMP nucleosidase low > 75
Dickeya dianthicola ME23 0.37 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.42 DZA65_RS07265 AMP nucleosidase low > 75
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.52 GFF370 AMP nucleosidase (EC 3.2.2.4) low > 90
Dickeya dadantii 3937 0.37 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.42 DDA3937_RS06940 AMP nucleosidase low > 74
Pseudomonas sp. RS175 0.36 PFR28_05216 tRNA-dihydrouridine synthase B 0.39 PFR28_03840 AMP nucleosidase low > 88
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.41 EX28DRAFT_0555 AMP nucleosidase low > 76
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_08215 tRNA-dihydrouridine synthase B 0.39 AO356_15450 AMP nucleosidase low > 104
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.39 Pf6N2E2_5027 AMP nucleosidase (EC 3.2.2.4) low > 103
Pseudomonas putida KT2440 0.36 PP_4820 tRNA-dihydrouridine synthase B 0.39 PP_4779 AMP nucleosidase low > 96
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.40 PFLU_RS26515 AMP nucleosidase low > 109
Pseudomonas simiae WCS417 0.35 PS417_02950 tRNA-dihydrouridine synthase B 0.40 PS417_24585 AMP nucleosidase low > 88
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_13660 tRNA-dihydrouridine synthase B 0.40 AO353_06335 AMP nucleosidase low > 101
Pseudomonas fluorescens SBW25 0.35 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.40 PFLU_RS26515 AMP nucleosidase low > 109
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.40 PfGW456L13_1388 AMP nucleosidase (EC 3.2.2.4) low > 87
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.40 Psyr_4337 AMP nucleosidase low > 86
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.39 Pf1N1B4_2721 AMP nucleosidase (EC 3.2.2.4) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.40 Psyr_4337 AMP nucleosidase low > 86
Pantoea sp. MT58 0.35 IAI47_02385 tRNA dihydrouridine synthase DusB 0.40 IAI47_07865 AMP nucleosidase low > 76
Acidovorax sp. GW101-3H11 0.34 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.53 Ac3H11_4669 AMP nucleosidase (EC 3.2.2.4) low > 79

Not shown: 27 genomes with orthologs for PGA1_c14770 only; 8 genomes with orthologs for PGA1_c34250 only