Conservation of cofitness between GFF2390 and GFF2754 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 1.0 GFF2754 UPF0028 protein YchK 0.83 16
Escherichia coli ECRC62 0.90 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.86 BNILDI_18625 rssA patatin-like phospholipase RssA low > 75
Escherichia coli ECOR38 0.90 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.87 HEPCGN_25040 rssA patatin-like phospholipase RssA low > 87
Escherichia coli ECOR27 0.90 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.87 NOLOHH_20470 rssA patatin-like phospholipase RssA low > 75
Escherichia coli ECRC100 0.90 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.87 OKFHMN_28580 rssA patatin-like phospholipase RssA low > 80
Escherichia coli ECRC99 0.90 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.87 KEDOAH_25575 rssA patatin-like phospholipase RssA — —
Escherichia coli BL21 0.90 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.86 ECD_01210 putative patatin-like family phospholipase low > 61
Escherichia coli BW25113 0.90 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.86 b1234 rssA conserved protein (RefSeq) low > 76
Escherichia coli ECRC101 0.90 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.87 MCAODC_21680 rssA patatin-like phospholipase RssA low > 87
Escherichia coli ECRC102 0.90 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.87 NIAGMN_27655 rssA patatin-like phospholipase RssA — —
Escherichia coli ECRC98 0.90 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.87 JDDGAC_05995 rssA patatin-like phospholipase RssA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.86 OHPLBJKB_02451 putative NTE family protein low > 73
Escherichia fergusonii Becca 0.90 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.87 EFB2_02692 putative NTE family protein low > 86
Escherichia coli Nissle 1917 0.90 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.86 ECOLIN_RS07470 patatin-like phospholipase RssA low > 55
Klebsiella michiganensis M5al 0.88 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.81 BWI76_RS17280 patatin family protein low > 92
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.79 EX28DRAFT_0860 Predicted esterase of the alpha-beta hydrolase superfamily low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.80 MPMX20_02594 putative NTE family protein low > 85
Serratia liquefaciens MT49 0.74 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.71 IAI46_14255 patatin-like phospholipase RssA low > 86
Dickeya dianthicola ME23 0.71 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.67 DZA65_RS10820 patatin-like phospholipase RssA 0.45 10
Dickeya dianthicola 67-19 0.71 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.66 HGI48_RS10345 patatin-like phospholipase RssA low > 71
Pantoea sp. MT58 0.71 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.73 IAI47_09020 patatin-like phospholipase RssA low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.67 DDA3937_RS10335 patatin-like phospholipase RssA low > 74
Rahnella sp. WP5 0.71 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.73 EX31_RS10105 patatin-like phospholipase RssA low > 89
Pectobacterium carotovorum WPP14 0.71 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.65 HER17_RS11055 patatin-like phospholipase RssA low > 75
Shewanella amazonensis SB2B 0.49 Sama_0041 sun protein (RefSeq) 0.42 Sama_1274 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.49 Shew_3738 sun protein (RefSeq) 0.41 Shew_2451 patatin (RefSeq) low > 60
Shewanella sp. ANA-3 0.49 Shewana3_0033 sun protein (RefSeq) 0.40 Shewana3_2605 patatin (RefSeq) low > 73
Shewanella oneidensis MR-1 0.49 SO0030 sun sun protein (NCBI ptt file) 0.40 SO2836 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.43 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.41 MIT1002_02140 NTE family protein RssA low > 70
Pseudomonas stutzeri RCH2 0.43 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.27 Psest_2463 Predicted esterase of the alpha-beta hydrolase superfamily low > 67
Pseudomonas sp. S08-1 0.41 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.28 OH686_01880 Bacterial patatin-like phospholipase domain containing protein low > 80
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.27 Pf6N2E2_2489 UPF0028 protein YchK low > 103
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_10630 16S rRNA methyltransferase 0.26 AO353_18940 alpha/beta hydrolase low > 101
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_11275 16S rRNA methyltransferase 0.27 AO356_03290 alpha/beta hydrolase low > 104
Marinobacter adhaerens HP15 0.41 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 0.27 HP15_1840 patatin low > 73
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.28 Pf1N1B4_310 UPF0028 protein YchK low > 87
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.28 PFLU_RS08250 alpha/beta hydrolase low > 109
Pseudomonas sp. RS175 0.41 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.26 PFR28_00944 putative NTE family protein low > 88
Pseudomonas fluorescens SBW25 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.28 PFLU_RS08250 alpha/beta hydrolase low > 109
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.26 PfGW456L13_2206 UPF0028 protein YchK low > 87
Pseudomonas simiae WCS417 0.40 PS417_00085 16S rRNA methyltransferase 0.28 PS417_08310 alpha/beta hydrolase low > 88
Pseudomonas putida KT2440 0.40 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.27 PP_2305 conserved protein of unknown function low > 96
Dechlorosoma suillum PS 0.34 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.40 Dsui_2541 putative esterase of the alpha-beta hydrolase superfamily low > 51
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.26 OKGIIK_15480 Serine protease low > 52
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.24 ABZR86_RS14850 patatin-like phospholipase family protein low > 74
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.32 H281DRAFT_06473 NTE family protein low > 103
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.30 QEN71_RS23405 patatin-like phospholipase family protein low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.19 GFF3828 UPF0028 protein YchK low > 90
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS01475 16S rRNA methyltransferase 0.32 BPHYT_RS07670 patatin — —
Paraburkholderia graminis OAS925 0.30 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.32 ABIE53_001764 NTE family protein low > 113
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.26 LRK54_RS08715 patatin-like phospholipase family protein low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.26 LRK55_RS08480 patatin-like phospholipase family protein low > 63
Variovorax sp. SCN45 0.25 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) 0.34 GFF4394 FIG00613342: Bacterial patatin-like phospholipase domain containing protein low > 127
Rhodopseudomonas palustris CGA009 0.22 TX73_000155 transcription antitermination factor NusB 0.32 TX73_017640 patatin-like phospholipase family protein 0.30 43
Azospirillum sp. SherDot2 0.22 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.34 MPMX19_00849 hypothetical protein low > 112
Azospirillum brasilense Sp245 0.22 AZOBR_RS00235 MFS transporter 0.37 AZOBR_RS09645 patatin low > 97
Bosea sp. OAE506 0.22 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.33 ABIE41_RS14040 patatin-like phospholipase family protein low > 77
Agrobacterium fabrum C58 0.21 Atu2825 Sun protein 0.30 Atu1751 hypothetical protein low > 89
Rhizobium sp. OAE497 0.21 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.31 ABIE40_RS09730 patatin-like phospholipase family protein low > 107
Mycobacterium tuberculosis H37Rv 0.15 Rv1407 Probable Fmu protein (sun protein) 0.26 Rv1063c Conserved hypothetical protein low > 58

Not shown: 30 genomes with orthologs for GFF2390 only; 3 genomes with orthologs for GFF2754 only