Conservation of cofitness between PS417_27585 and PS417_12310 in Pseudomonas simiae WCS417

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27585 diaminopimelate epimerase 1.0 PS417_12310 methionine synthase 0.31 18
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29270 diaminopimelate epimerase 0.98 PFLU_RS13000 methionine synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29270 diaminopimelate epimerase 0.98 PFLU_RS13000 methionine synthase — —
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2173 Diaminopimelate epimerase (EC 5.1.1.7) 0.96 Pf1N1B4_5661 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_844 Diaminopimelate epimerase (EC 5.1.1.7) 0.96 PfGW456L13_2847 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 87
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_09040 diaminopimelate epimerase 0.96 AO353_21615 methionine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4418 Diaminopimelate epimerase (EC 5.1.1.7) 0.95 Pf6N2E2_2068 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 103
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_12735 diaminopimelate epimerase 0.96 AO356_00545 methionine synthase low > 104
Pseudomonas sp. RS175 0.88 PFR28_04376 Diaminopimelate epimerase 0.95 PFR28_01369 Methionine synthase — —
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0183 diaminopimelate epimerase 0.92 Psyr_2464 methionine synthase (B12-dependent) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0183 diaminopimelate epimerase 0.92 Psyr_2464 methionine synthase (B12-dependent) — —
Pseudomonas stutzeri RCH2 0.81 Psest_3765 diaminopimelate epimerase 0.87 Psest_2102 5-methyltetrahydrofolate--homocysteine methyltransferase — —
Pseudomonas sp. S08-1 0.81 OH686_13795 diaminopimelate epimerase 0.87 OH686_03335 methionine synthase — —
Pseudomonas putida KT2440 0.81 PP_5228 diaminopimelate epimerase 0.88 PP_2375 cobalamin-dependent methionine synthase — —
Marinobacter adhaerens HP15 0.64 HP15_248 diaminopimelate epimerase 0.68 HP15_1792 B12-dependent methionine synthase — —
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_00640 diaminopimelate epimerase 0.64 CSW01_02060 methionine synthase — —
Dechlorosoma suillum PS 0.59 Dsui_0649 diaminopimelate epimerase 0.63 Dsui_0779 5-methyltetrahydrofolate--homocysteine methyltransferase — —
Dickeya dianthicola 67-19 0.58 HGI48_RS20055 diaminopimelate epimerase 0.64 HGI48_RS19130 methionine synthase — —
Dickeya dianthicola ME23 0.58 DZA65_RS21100 diaminopimelate epimerase 0.65 DZA65_RS20250 methionine synthase — —
Rahnella sp. WP5 0.58 EX31_RS15155 diaminopimelate epimerase 0.66 EX31_RS11760 methionine synthase low > 89
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4478 diaminopimelate epimerase (EC 5.1.1.7) 0.65 EX28DRAFT_4326 methionine synthase (B12-dependent) (EC 2.1.1.13) low > 76
Escherichia coli ECOR38 0.58 HEPCGN_13135 dapF diaminopimelate epimerase 0.65 HEPCGN_11885 metH methionine synthase — —
Escherichia fergusonii Becca 0.58 EFB2_04828 Diaminopimelate epimerase 0.65 EFB2_04592 Methionine synthase — —
Escherichia coli ECRC99 0.58 KEDOAH_13720 dapF diaminopimelate epimerase 0.65 KEDOAH_14920 metH methionine synthase — —
Escherichia coli ECRC102 0.58 NIAGMN_12185 dapF diaminopimelate epimerase 0.65 NIAGMN_10990 metH methionine synthase — —
Escherichia coli ECRC101 0.58 OKFHMN_14430 dapF diaminopimelate epimerase 0.65 OKFHMN_13240 metH methionine synthase — —
Escherichia coli ECRC101 0.58 MCAODC_04935 dapF diaminopimelate epimerase 0.65 MCAODC_03740 metH methionine synthase — —
Escherichia coli BW25113 0.58 b3809 dapF diaminopimelate epimerase (VIMSS) 0.65 b4019 metH B12-dependent methionine synthase (NCBI) — —
Escherichia coli ECOR27 0.58 NOLOHH_06560 dapF diaminopimelate epimerase 0.65 NOLOHH_05380 metH methionine synthase — —
Escherichia coli ECRC62 0.58 BNILDI_04975 dapF diaminopimelate epimerase 0.65 BNILDI_06140 metH methionine synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_04241 Diaminopimelate epimerase 0.65 OHPLBJKB_04030 Methionine synthase — —
Escherichia coli ECRC98 0.58 JDDGAC_18055 dapF diaminopimelate epimerase 0.65 JDDGAC_16865 metH methionine synthase — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS01340 diaminopimelate epimerase 0.66 HER17_RS02310 methionine synthase — —
Escherichia coli BL21 0.58 ECD_03685 diaminopimelate epimerase 0.65 ECD_03891 homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent low > 60
Escherichia coli Nissle 1917 0.57 ECOLIN_RS21865 diaminopimelate epimerase 0.65 ECOLIN_RS23160 methionine synthase — —
Enterobacter sp. TBS_079 0.57 MPMX20_04467 Diaminopimelate epimerase 0.65 MPMX20_00235 Methionine synthase low > 85
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS21455 diaminopimelate epimerase 0.60 HSERO_RS21740 methionine synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF237 Diaminopimelate epimerase (EC 5.1.1.7) 0.65 GFF1358 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) — —
Dickeya dadantii 3937 0.57 DDA3937_RS19900 diaminopimelate epimerase 0.65 DDA3937_RS19040 methionine synthase — —
Serratia liquefaciens MT49 0.57 IAI46_00715 diaminopimelate epimerase 0.65 IAI46_23155 methionine synthase — —
Shewanella sp. ANA-3 0.56 Shewana3_0391 dapF diaminopimelate epimerase (RefSeq) 0.62 Shewana3_3282 metH B12-dependent methionine synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO4308 dapF diaminopimelate epimerase (NCBI ptt file) 0.62 SO1030 metH 5-methyltetrahydrofolate--homocysteine methyltransferase (NCBI ptt file) — —
Pantoea sp. MT58 0.56 IAI47_18410 diaminopimelate epimerase 0.66 IAI47_17990 methionine synthase low > 76
Shewanella loihica PV-4 0.55 Shew_0323 dapF diaminopimelate epimerase (RefSeq) 0.62 Shew_0710 metH B12-dependent methionine synthase (RefSeq) — —
Klebsiella michiganensis M5al 0.54 BWI76_RS01200 diaminopimelate epimerase 0.65 BWI76_RS01685 methionine synthase 0.37 29
Shewanella amazonensis SB2B 0.53 Sama_3249 dapF diaminopimelate epimerase (RefSeq) 0.62 Sama_0758 metH B12-dependent methionine synthase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0246 diaminopimelate epimerase (EC 5.1.1.7) 0.64 B158DRAFT_2466 methionine synthase (B12-dependent) (EC 2.1.1.13) — —
Acinetobacter radioresistens SK82 0.50 MPMX26_02231 Diaminopimelate epimerase 0.66 MPMX26_02351 Methionine synthase — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS13465 diaminopimelate epimerase 0.58 ABCV34_RS14560 methionine synthase — —
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_1927 dapF diaminopimelate epimerase 0.21 Synpcc7942_1372 metH methionine synthase (B12-dependent) — —
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS01230 diaminopimelate epimerase 0.48 HMPREF1078_RS14955 methionine synthase low > 61
Rhodopseudomonas palustris CGA009 0.28 TX73_001300 diaminopimelate epimerase 0.61 TX73_019180 methionine synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_19550 diaminopimelate epimerase 0.59 CA264_16785 methionine synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS21670 diaminopimelate epimerase 0.60 ABZR88_RS20930 methionine synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS23025 diaminopimelate epimerase 0.60 CA265_RS23440 methionine synthase — —
Mycobacterium tuberculosis H37Rv 0.13 Rv2726c Probable diaminopimelate epimerase DapF (DAP epimerase) 0.21 Rv2124c 5-methyltetrahydrofolate--homocystein methyltransferase MetH (methionine synthase, vitamin-B12 dependent isozyme) (ms) — —

Not shown: 34 genomes with orthologs for PS417_27585 only; 7 genomes with orthologs for PS417_12310 only