Conservation of cofitness between GFF1934 and GFF2047 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 1.0 GFF2047 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) 0.84 10
Escherichia coli BW25113 0.97 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.96 b2416 ptsI PEP-protein phosphotransferase of PTS system (enzyme I) (NCBI) — —
Escherichia coli ECOR27 0.97 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.96 NOLOHH_13870 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Escherichia coli BL21 0.97 ECD_02243 tRNA pseudouridine(38-40) synthase 0.96 ECD_02316 PEP-protein phosphotransferase of PTS system (enzyme I) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.96 OHPLBJKB_01307 Phosphoenolpyruvate-protein phosphotransferase — —
Escherichia coli ECRC101 0.96 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.96 MCAODC_12720 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Escherichia coli ECRC101 0.96 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.96 OKFHMN_22190 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Escherichia coli ECOR38 0.96 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.96 HEPCGN_21370 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI low > 85
Escherichia coli ECRC99 0.96 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.96 KEDOAH_06030 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Escherichia coli ECRC102 0.96 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.96 NIAGMN_19960 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Escherichia coli ECRC98 0.96 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.96 JDDGAC_26140 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Escherichia coli ECRC62 0.96 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.96 BNILDI_12735 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Escherichia fergusonii Becca 0.96 EFB2_01540 tRNA pseudouridine synthase A 0.96 EFB2_01460 Phosphoenolpyruvate-protein phosphotransferase — —
Enterobacter sp. TBS_079 0.92 MPMX20_03253 tRNA pseudouridine synthase A 0.96 MPMX20_03310 Phosphoenolpyruvate-protein phosphotransferase low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.96 EX28DRAFT_0212 phosphoenolpyruvate-protein phosphotransferase — —
Klebsiella michiganensis M5al 0.90 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.95 BWI76_RS20650 phosphoenolpyruvate--protein phosphotransferase low > 92
Pectobacterium carotovorum WPP14 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.83 HER17_RS17180 phosphoenolpyruvate-protein phosphotransferase PtsI low > 75
Pantoea sp. MT58 0.80 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.84 IAI47_05425 phosphoenolpyruvate-protein phosphotransferase PtsI low > 76
Erwinia tracheiphila SCR3 0.80 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.84 LU632_RS06615 ptsI phosphoenolpyruvate-protein phosphotransferase PtsI — —
Serratia liquefaciens MT49 0.80 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.84 IAI46_18460 phosphoenolpyruvate-protein phosphotransferase PtsI low > 86
Dickeya dianthicola ME23 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.81 DZA65_RS04355 phosphoenolpyruvate-protein phosphotransferase PtsI 0.39 17
Dickeya dianthicola 67-19 0.79 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.81 HGI48_RS04440 phosphoenolpyruvate-protein phosphotransferase PtsI low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.81 DDA3937_RS04480 phosphoenolpyruvate-protein phosphotransferase PtsI low > 74
Rahnella sp. WP5 0.73 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.86 EX31_RS20185 phosphoenolpyruvate-protein phosphotransferase PtsI low > 89
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.71 CSW01_04930 phosphoenolpyruvate-protein phosphotransferase PtsI low > 62
Shewanella sp. ANA-3 0.70 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.31 Shewana3_2257 phosphoenolpyruvate--protein phosphotransferase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.69 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.31 Sama_1650 phosphotransferase system, enzyme I (RefSeq) low > 62
Shewanella loihica PV-4 0.69 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.29 Shew_1865 phosphoenolpyruvate-protein phosphotransferase (RefSeq) — —
Dechlorosoma suillum PS 0.49 Dsui_3194 pseudouridylate synthase I 0.31 Dsui_0742 phosphoenolpyruvate-protein phosphotransferase low > 51
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS16485 tRNA pseudouridine synthase A 0.32 HSERO_RS00450 phosphoenolpyruvate-protein phosphotransferase low > 78
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS33885 tRNA pseudouridine synthase A 0.33 BPHYT_RS02575 phosphoenolpyruvate-protein phosphotransferase low > 109
Lysobacter sp. OAE881 0.46 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.27 ABIE51_RS16000 phosphoenolpyruvate--protein phosphotransferase low > 62
Paraburkholderia graminis OAS925 0.46 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.33 ABIE53_000660 phosphotransferase system enzyme I (PtsI) low > 113
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.33 QEN71_RS01430 phosphoenolpyruvate--protein phosphotransferase low > 153
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.31 Xcc-8004.1655.1 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) low > 74
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.29 LRK54_RS12845 phosphoenolpyruvate--protein phosphotransferase low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.29 LRK55_RS12545 phosphoenolpyruvate--protein phosphotransferase low > 63
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.29 Ac3H11_2115 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) low > 79
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.31 ABZR86_RS19785 phosphoenolpyruvate--protein phosphotransferase low > 74
Ralstonia solanacearum GMI1000 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.32 RS_RS01715 phosphoenolpyruvate--protein phosphotransferase low > 80
Castellaniella sp019104865 MT123 0.42 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.29 ABCV34_RS04780 phosphoenolpyruvate--protein phosphotransferase 0.96 21
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.30 GFF2931 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) low > 90
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.29 OKGIIK_02235 ptsP phosphoenolpyruvate--protein phosphotransferase — —
Variovorax sp. SCN45 0.41 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.29 GFF3653 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) low > 127
Variovorax sp. OAS795 0.40 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.29 ABID97_RS00565 phosphoenolpyruvate--protein phosphotransferase low > 91
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS14370 tRNA pseudouridine synthase A 0.35 RR42_RS01795 phosphoenolpyruvate-protein phosphotransferase — —
Azospirillum sp. SherDot2 0.32 MPMX19_02005 tRNA pseudouridine synthase A 0.32 MPMX19_02625 Phosphoenolpyruvate-protein phosphotransferase — —
Azospirillum brasilense Sp245 0.32 AZOBR_RS03570 tRNA pseudouridine synthase A 0.33 AZOBR_RS30470 phosphoenolpyruvate-protein phosphotransferase — —
Rhodospirillum rubrum S1H 0.30 Rru_A3352 Pseudouridylate synthase (NCBI) 0.31 Rru_A3445 Phosphoenolpyruvate-protein phosphotransferase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA 0.33 AMB_RS22220 phosphoenolpyruvate--protein phosphotransferase low > 64
Fusobacterium nucleatum SB010 0.24 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA 0.51 HUW76_00765 phosphoenolpyruvate--protein phosphotransferase low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0911 truA tRNA pseudouridine synthase A (TIGR) 0.34 DVU0829 ptsI phosphoenolpyruvate-protein phosphotransferase (TIGR) 0.57 1
Desulfovibrio vulgaris Miyazaki F 0.22 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) 0.32 DvMF_2877 phosphoenolpyruvate-protein phosphotransferase (RefSeq) low > 51
Bifidobacterium breve UCC2003 0.21 BBR_RS18795 tRNA pseudouridine(38-40) synthase TruA 0.22 BBR_RS11210 phosphoenolpyruvate--protein phosphotransferase low > 34

Not shown: 49 genomes with orthologs for GFF1934 only; 1 genomes with orthologs for GFF2047 only