Conservation of cofitness between PS417_20155 and PS417_09800 in Pseudomonas simiae WCS417

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_20155 23S rRNA methyltransferase 1.0 PS417_09800 cytosine deaminase 0.27 8
Pseudomonas fluorescens SBW25 0.94 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.95 PFLU_RS10380 cytosine deaminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.95 PFLU_RS10380 cytosine deaminase low > 109
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.93 Pf1N1B4_113 Cytosine deaminase (EC 3.5.4.1) — —
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.94 Pf6N2E2_34 Cytosine deaminase (EC 3.5.4.1) low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_19055 23S rRNA methyltransferase 0.94 AO356_21245 cytosine deaminase low > 104
Pseudomonas sp. RS175 0.84 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.93 PFR28_02854 Cytosine deaminase low > 88
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.92 PfGW456L13_2445 Cytosine deaminase (EC 3.5.4.1) low > 87
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_02715 23S rRNA methyltransferase 0.93 AO353_19755 cytosine deaminase low > 101
Pseudomonas putida KT2440 0.69 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 PP_3189 cytosine deaminase / isoguanine deaminase low > 96
Pseudomonas stutzeri RCH2 0.67 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.79 Psest_0773 Cytosine deaminase and related metal-dependent hydrolases low > 67
Marinobacter adhaerens HP15 0.40 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.64 HP15_2772 N-isopropylammelide isopropylaminohydrolase low > 73
Pantoea sp. MT58 0.36 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 IAI47_01925 cytosine deaminase low > 76
Serratia liquefaciens MT49 0.36 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 IAI46_23650 cytosine deaminase low > 86
Escherichia coli ECOR38 0.36 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 HEPCGN_07460 codA cytosine/isoguanine deaminase low > 87
Escherichia coli ECOR27 0.35 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 NOLOHH_01745 codA cytosine/isoguanine deaminase low > 75
Escherichia coli ECRC100 0.35 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 OKFHMN_08845 codA cytosine/isoguanine deaminase low > 80
Escherichia coli ECRC99 0.35 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 KEDOAH_19120 codA cytosine/isoguanine deaminase — —
Escherichia coli ECRC98 0.35 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 JDDGAC_12500 codA cytosine/isoguanine deaminase low > 86
Escherichia coli ECRC102 0.35 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 NIAGMN_06900 codA cytosine/isoguanine deaminase — —
Escherichia coli ECRC101 0.35 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 MCAODC_28075 codA cytosine/isoguanine deaminase low > 87
Escherichia coli BW25113 0.35 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.58 b0337 codA cytosine deaminase (NCBI) low > 76
Escherichia coli Nissle 1917 0.35 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 ECOLIN_RS02175 cytosine/isoguanine deaminase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 OHPLBJKB_03334 Cytosine deaminase low > 73
Escherichia coli ECRC62 0.35 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 BNILDI_23160 codA cytosine/isoguanine deaminase low > 75
Dickeya dianthicola ME23 0.35 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 DZA65_RS18425 cytosine deaminase low > 75
Dickeya dadantii 3937 0.35 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 DDA3937_RS17280 cytosine deaminase low > 74
Escherichia fergusonii Becca 0.35 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 EFB2_03701 Cytosine deaminase low > 86
Escherichia coli BL21 0.35 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.58 ECD_00291 cytosine/isoguanine deaminase low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.58 GFF2960 Cytosine deaminase (EC 3.5.4.1) low > 78
Dickeya dianthicola 67-19 0.34 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 HGI48_RS17335 cytosine deaminase low > 71
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.57 EX28DRAFT_4163 Cytosine deaminase and related metal-dependent hydrolases low > 76
Enterobacter sp. TBS_079 0.34 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 MPMX20_04268 Cytosine deaminase low > 85
Klebsiella michiganensis M5al 0.34 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.72 BWI76_RS07850 putative cytosine deaminase-related metal-dependent hydrolase low > 92
Rahnella sp. WP5 0.34 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 EX31_RS04665 cytosine deaminase low > 89
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.41 H281DRAFT_00460 cytosine deaminase low > 103
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS09125 23S rRNA methyltransferase 0.41 BPHYT_RS12880 cytosine deaminase low > 109
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 QEN71_RS05690 amidohydrolase family protein low > 153
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS13170 23S rRNA methyltransferase 0.38 RR42_RS30785 cytosine deaminase low > 128
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.39 RPSI07_RS15790 cytosine deaminase low > 81
Variovorax sp. SCN45 0.29 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.40 GFF335 Cytosine deaminase (EC 3.5.4.1) low > 127
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 RALBFv3_RS01695 cytosine deaminase low > 76
Ralstonia solanacearum UW163 0.29 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 UW163_RS15005 cytosine deaminase — —
Ralstonia solanacearum GMI1000 0.29 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 RS_RS08030 cytosine deaminase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.15 GFF30 Cytosine deaminase (EC 3.5.4.1) low > 90
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.37 Ac3H11_2437 Cytosine deaminase (EC 3.5.4.1) low > 79
Synechococcus elongatus PCC 7942 0.17 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.11 Synpcc7942_0568 codA cytosine deaminase low > 38
Agrobacterium fabrum C58 0.16 Atu0735 RNA methyltransferase 0.15 Atu4698 cytosine deaminase low > 89
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.12 CA265_RS03820 deaminase low > 88
Rhizobium sp. OAE497 0.16 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.39 ABIE40_RS21295 amidohydrolase family protein low > 107
Azospirillum sp. SherDot2 0.15 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 MPMX19_04386 Cytosine deaminase low > 112
Bosea sp. OAE506 0.15 ABIE41_RS22255 RNA methyltransferase 0.18 ABIE41_RS17380 amidohydrolase family protein low > 77
Bifidobacterium breve UCC2003 0.14 BBR_RS16615 class I SAM-dependent RNA methyltransferase 0.44 BBR_RS17425 cytosine deaminase low > 34
Sinorhizobium meliloti 1021 0.14 SMc00974 RNA methyltransferase 0.39 SMa2371 cytosine deaminase low > 103
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.40 AZOBR_RS31895 cytosine deaminase low > 97
Dinoroseobacter shibae DFL-12 0.13 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.36 Dshi_1943 N-isopropylammelide isopropylaminohydrolase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.13 PGA1_c34810 putative RNA methyltransferase 0.38 PGA1_c26940 cytosine deaminase CodA low > 62
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.38 Rru_A2788 N-isopropylammelide isopropylaminohydrolase (NCBI) — —

Not shown: 41 genomes with orthologs for PS417_20155 only; 2 genomes with orthologs for PS417_09800 only