Conservation of cofitness between GFF4870 and GFF1756 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4870 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway 1.0 GFF1756 DNA recombination and repair protein RecF 0.41 7
Escherichia fergusonii Becca 0.95 EFB2_01105 tRNA threonylcarbamoyladenosine dehydratase 0.96 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli Nissle 1917 0.95 ECOLIN_RS15670 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 ECOLIN_RS21310 DNA replication/repair protein RecF low > 55
Escherichia coli BW25113 0.95 b2812 ygdL hypothetical protein (NCBI) 0.96 b3700 recF recombination protein F (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_00919 tRNA threonylcarbamoyladenosine dehydratase 0.96 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli ECRC62 0.95 BNILDI_10480 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 BNILDI_04365 recF DNA replication/repair protein RecF low > 75
Escherichia coli ECOR38 0.95 HEPCGN_19350 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.95 HEPCGN_13720 recF DNA replication/repair protein RecF low > 87
Escherichia coli ECOR27 0.95 NOLOHH_11975 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 NOLOHH_07165 recF DNA replication/repair protein RecF low > 75
Escherichia coli BL21 0.95 ECD_02663 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA 0.96 ECD_03583 gap repair protein low > 61
Escherichia coli ECRC99 0.93 KEDOAH_08035 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC98 0.93 JDDGAC_23760 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 JDDGAC_18645 recF DNA replication/repair protein RecF low > 86
Escherichia coli ECRC100 0.93 OKFHMN_20095 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 OKFHMN_15025 recF DNA replication/repair protein RecF low > 80
Escherichia coli ECRC101 0.93 MCAODC_10620 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 MCAODC_05535 recF DNA replication/repair protein RecF low > 87
Escherichia coli ECRC102 0.93 NIAGMN_17865 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Enterobacter sp. TBS_079 0.89 MPMX20_03675 tRNA threonylcarbamoyladenosine dehydratase 0.96 MPMX20_00003 DNA replication and repair protein RecF low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2888 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.95 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Klebsiella michiganensis M5al 0.88 BWI76_RS22975 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.95 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Rahnella sp. WP5 0.84 EX31_RS13130 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.80 EX31_RS05975 DNA replication/repair protein RecF low > 89
Serratia liquefaciens MT49 0.84 IAI46_20360 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.83 IAI46_00015 DNA replication/repair protein RecF low > 86
Pantoea sp. MT58 0.83 IAI47_04005 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.83 IAI47_00015 DNA replication/repair protein RecF low > 76
Erwinia tracheiphila SCR3 0.83 LU632_RS06230 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.84 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Dickeya dadantii 3937 0.82 DDA3937_RS05030 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.81 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Pectobacterium carotovorum WPP14 0.81 HER17_RS16435 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.81 HER17_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dianthicola ME23 0.78 DZA65_RS05375 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.81 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dianthicola 67-19 0.78 HGI48_RS05035 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.81 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_11750 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.55 CSW01_00065 DNA replication and repair protein RecF low > 62
Shewanella loihica PV-4 0.61 Shew_3251 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.46 Shew_0003 DNA replication and repair protein RecF (RefSeq) low > 60
Shewanella amazonensis SB2B 0.61 Sama_0546 HesA/MoeB/ThiF family protein (RefSeq) 0.44 Sama_0015 recF recombination protein F (RefSeq) low > 62
Shewanella sp. ANA-3 0.58 Shewana3_0735 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.46 Shewana3_0011 recF recombination protein F (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO3895 HesA/MoeB/ThiF family protein (NCBI ptt file) 0.45 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.57 HP15_266 UBA/THIF-type NAD/FAD binding protein 0.28 HP15_3705 DNA replication and repair protein recF low > 73
Alteromonas macleodii MIT1002 0.54 MIT1002_01936 Molybdopterin-synthase adenylyltransferase 0.33 MIT1002_00003 DNA replication and repair protein RecF low > 70
Pseudomonas putida KT2440 0.53 PP_1527 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) 0.38 PP_0012 DNA replication and repair protein low > 96
Pseudomonas stutzeri RCH2 0.51 Psest_1619 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.36 Psest_0004 recF protein low > 67
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_4719 HesA/MoeB/ThiF family protein related to EC-YgdL 0.36 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.37 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25 0.51 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.37 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas simiae WCS417 0.51 PS417_06165 thiamine biosynthesis protein ThiF 0.36 PS417_00015 recombinase RecF low > 88
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_06085 thiamine biosynthesis protein ThiF 0.37 AO356_11635 recombinase RecF low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein 0.38 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_16420 thiamine biosynthesis protein ThiF 0.37 AO353_10480 recombinase RecF 0.25 88
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_3081 HesA/MoeB/ThiF family protein related to EC-YgdL 0.36 Pf6N2E2_4197 DNA recombination and repair protein RecF low > 103
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein 0.38 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas sp. RS175 0.50 PFR28_00387 tRNA threonylcarbamoyladenosine dehydratase 0.37 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_3074 HesA/MoeB/ThiF family protein related to EC-YgdL 0.37 Pf1N1B4_1927 DNA recombination and repair protein RecF low > 87
Pseudomonas sp. S08-1 0.50 OH686_06545 HesA/MoeB/ThiF family protein 0.38 OH686_12620 DNA recombination and repair protein RecF low > 80
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0922 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.30 B158DRAFT_0366 DNA replication and repair protein RecF low > 40
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS00565 ThiF family adenylyltransferase 0.25 ABZR86_RS15145 DNA replication/repair protein RecF low > 74
Lysobacter sp. OAE881 0.46 ABIE51_RS12585 tRNA threonylcarbamoyladenosine dehydratase 0.25 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Rhodanobacter denitrificans MT42 0.45 LRK55_RS14520 tRNA threonylcarbamoyladenosine dehydratase 0.25 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS14805 tRNA threonylcarbamoyladenosine dehydratase 0.25 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Acinetobacter radioresistens SK82 0.42 MPMX26_00481 tRNA threonylcarbamoyladenosine dehydratase 0.26 MPMX26_00003 DNA replication and repair protein RecF low > 36
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3494.1 Molybdopterin biosynthesis protein MoeB 0.26 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_03630 tcdA tRNA A37 threonylcarbamoyladenosine dehydratase 0.23 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS00200 tRNA threonylcarbamoyladenosine dehydratase 0.19 HMPREF1058_RS17135 DNA replication and repair protein RecF low > 67
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS06980 tRNA threonylcarbamoyladenosine dehydratase 0.17 HMPREF1078_RS14620 DNA replication and repair protein RecF low > 61
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS01100 tRNA threonylcarbamoyladenosine dehydratase 0.18 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS03125 tRNA threonylcarbamoyladenosine dehydratase 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Bacteroides thetaiotaomicron VPI-5482 0.23 BT3639 ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis (NCBI ptt file) 0.17 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.22 BACOVA_03472 ThiF family protein 0.17 BACOVA_05088 DNA replication and repair protein RecF low > 94

Not shown: 17 genomes with orthologs for GFF4870 only; 22 genomes with orthologs for GFF1756 only