Conservation of cofitness between PS417_17530 and PS417_07620 in Pseudomonas simiae WCS417

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_17530 ArsR family transcriptional regulator 1.0 PS417_07620 beta-hexosaminidase 0.20 16
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_26620 ArsR family transcriptional regulator 0.93 AO353_00455 beta-hexosaminidase low > 101
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_4483 Transcriptional regulator, ArsR family 0.91 Pf1N1B4_3912 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) — —
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_3537 Transcriptional regulator, ArsR family 0.92 PfGW456L13_4031 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 87
Ralstonia sp. UNC404CL21Col 0.75 ABZR87_RS14035 metalloregulator ArsR/SmtB family transcription factor 0.43 ABZR87_RS10230 beta-N-acetylhexosaminidase low > 80
Ralstonia solanacearum GMI1000 0.70 RS_RS07745 transcriptional regulator 0.43 RS_RS05290 beta-N-acetylhexosaminidase low > 80
Ralstonia solanacearum PSI07 0.68 RPSI07_RS15365 ArsR family transcriptional regulator 0.43 RPSI07_RS18950 beta-N-acetylhexosaminidase low > 81
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS02060 transcriptional regulator 0.44 RALBFv3_RS14510 beta-N-acetylhexosaminidase low > 76
Ralstonia solanacearum UW163 0.68 UW163_RS15385 transcriptional regulator 0.44 UW163_RS11975 beta-N-acetylhexosaminidase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.57 GFF3249 Transcriptional regulator, ArsR family 0.39 GFF3351 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 90
Pseudomonas stutzeri RCH2 0.57 Psest_1782 Predicted transcriptional regulators 0.74 Psest_2643 Beta-glucosidase-related glycosidases low > 67
Acidovorax sp. GW101-3H11 0.56 Ac3H11_2264 Transcriptional regulator, ArsR family 0.41 Ac3H11_1561 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 79
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_02691 transcriptional regulator, ArsR family 0.45 H281DRAFT_04367 beta-N-acetylhexosaminidase 0.28 81
Serratia liquefaciens MT49 0.50 IAI46_09640 winged helix-turn-helix transcriptional regulator 0.43 IAI46_09900 beta-N-acetylhexosaminidase low > 86
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS35445 ArsR family transcriptional regulator 0.42 RR42_RS14015 beta-hexosaminidase low > 128
Acinetobacter radioresistens SK82 0.48 MPMX26_01494 Biofilm growth-associated repressor 0.53 MPMX26_00420 Beta-hexosaminidase low > 36
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_02957 ArsR-family transcriptional regulator 0.25 CCNA_02085 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase low > 67
Caulobacter crescentus NA1000 0.47 CCNA_02957 ArsR-family transcriptional regulator 0.25 CCNA_02085 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase low > 66
Dickeya dadantii 3937 0.47 DDA3937_RS20270 helix-turn-helix transcriptional regulator 0.41 DDA3937_RS13050 beta-N-acetylhexosaminidase low > 74
Dickeya dianthicola 67-19 0.46 HGI48_RS00955 helix-turn-helix transcriptional regulator 0.41 HGI48_RS13115 beta-N-acetylhexosaminidase low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS01015 helix-turn-helix transcriptional regulator 0.41 DZA65_RS13585 beta-N-acetylhexosaminidase low > 75
Rhodospirillum rubrum S1H 0.44 Rru_A2308 Transcriptional Regulator, ArsR family (NCBI) 0.21 Rru_A1777 Beta-N-acetylhexosaminidase (NCBI) low > 58
Agrobacterium fabrum C58 0.44 Atu3466 ArsR family transcriptional regulator 0.23 Atu1709 glycosyl hydrolase low > 89
Dinoroseobacter shibae DFL-12 0.39 Dshi_2812 transcriptional regulator, ArsR family (RefSeq) 0.19 Dshi_1726 Beta-N-acetylhexosaminidase (RefSeq) low > 64
Shewanella amazonensis SB2B 0.39 Sama_0920 transcriptional regulator HlyU (RefSeq) 0.42 Sama_1326 beta-hexosaminidase (RefSeq) low > 62
Rhizobium sp. OAE497 0.38 ABIE40_RS17870 metalloregulator ArsR/SmtB family transcription factor 0.22 ABIE40_RS08445 beta-N-acetylhexosaminidase 0.61 54
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS11595 ArsR family transcriptional regulator 0.44 HSERO_RS09685 beta-hexosaminidase — —
Shewanella loihica PV-4 0.37 Shew_1095 ArsR family transcriptional regulator (RefSeq) 0.44 Shew_1626 beta-hexosaminidase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_03555 transcriptional regulator 0.41 CSW01_03620 beta-hexosaminidase low > 62
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS07735 metalloregulator ArsR/SmtB family transcription factor 0.36 LRK54_RS17010 beta-N-acetylhexosaminidase — —
Rhodanobacter denitrificans MT42 0.36 LRK55_RS07465 metalloregulator ArsR/SmtB family transcription factor 0.36 LRK55_RS16725 beta-N-acetylhexosaminidase — —
Shewanella oneidensis MR-1 0.36 SO3538 hlyU transcriptional regulator HlyU (NCBI ptt file) 0.42 SO2250 nagZ beta-hexosaminidase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.36 Shewana3_3141 ArsR family transcriptional regulator (RefSeq) 0.42 Shewana3_2293 beta-hexosaminidase (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0345 transcriptional regulator, ArsR family 0.46 B158DRAFT_1585 Beta-glucosidase-related glycosidases — —
Escherichia coli ECOR38 0.35 HEPCGN_20180 ygaV putative HTH-type transcriptional regulator YgaV 0.42 HEPCGN_23980 nagZ beta-N-acetylhexosaminidase low > 87
Escherichia coli BL21 0.35 ECD_02523 tributyltin-inducible repressor of ygaVP 0.42 ECD_01103 beta N-acetyl-glucosaminidase low > 61
Escherichia coli BW25113 0.35 b2667 ygaV predicted DNA-binding transcriptional regulator (NCBI) 0.43 b1107 nagZ beta-hexosaminidase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_01065 putative HTH-type transcriptional regulator YgaV 0.42 OHPLBJKB_02559 Beta-hexosaminidase low > 73
Escherichia coli ECOR27 0.35 NOLOHH_12710 ygaV putative HTH-type transcriptional regulator YgaV 0.43 NOLOHH_21035 nagZ beta-N-acetylhexosaminidase low > 75
Escherichia coli ECRC62 0.35 BNILDI_11270 ygaV putative HTH-type transcriptional regulator YgaV 0.43 BNILDI_19195 nagZ beta-N-acetylhexosaminidase low > 75
Escherichia fergusonii Becca 0.35 EFB2_01263 putative HTH-type transcriptional regulator YgaV 0.42 EFB2_02868 Beta-hexosaminidase low > 86
Escherichia coli ECRC99 0.34 KEDOAH_07255 ygaV putative HTH-type transcriptional regulator YgaV 0.42 KEDOAH_24250 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli ECRC98 0.34 JDDGAC_24545 ygaV putative HTH-type transcriptional regulator YgaV 0.42 JDDGAC_07165 nagZ beta-N-acetylhexosaminidase low > 86
Escherichia coli ECRC102 0.34 NIAGMN_18650 ygaV putative HTH-type transcriptional regulator YgaV 0.42 NIAGMN_24325 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli ECRC101 0.34 MCAODC_11405 ygaV putative HTH-type transcriptional regulator YgaV 0.42 MCAODC_22865 nagZ beta-N-acetylhexosaminidase low > 87
Escherichia coli ECRC100 0.34 OKFHMN_20885 ygaV putative HTH-type transcriptional regulator YgaV 0.42 OKFHMN_03505 nagZ beta-N-acetylhexosaminidase low > 80
Enterobacter asburiae PDN3 0.33 EX28DRAFT_2752 Predicted transcriptional regulators 0.41 EX28DRAFT_1823 Beta-glucosidase-related glycosidases low > 76
Enterobacter sp. TBS_079 0.33 MPMX20_03547 putative HTH-type transcriptional regulator YgaV 0.41 MPMX20_01788 Beta-hexosaminidase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF1572 Transcriptional regulator, ArsR family 0.41 GFF3390 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 78
Escherichia coli Nissle 1917 0.33 ECOLIN_RS14870 metalloregulator ArsR/SmtB family transcription factor 0.42 ECOLIN_RS06390 beta-N-acetylhexosaminidase — —
Klebsiella michiganensis M5al 0.32 BWI76_RS21995 transcriptional regulator 0.42 BWI76_RS11165 beta-N-acetylhexosaminidase low > 92
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0944 Predicted transcriptional regulators 0.20 Ga0059261_3481 Beta-glucosidase-related glycosidases — —
Pectobacterium carotovorum WPP14 0.31 HER17_RS03345 metalloregulator ArsR/SmtB family transcription factor 0.44 HER17_RS08725 beta-N-acetylhexosaminidase low > 75
Pantoea sp. MT58 0.27 IAI47_19710 helix-turn-helix transcriptional regulator 0.42 IAI47_11995 beta-N-acetylhexosaminidase low > 76
Rahnella sp. WP5 0.25 EX31_RS21725 helix-turn-helix transcriptional regulator 0.42 EX31_RS24500 beta-N-acetylhexosaminidase low > 89

Not shown: 4 genomes with orthologs for PS417_17530 only; 23 genomes with orthologs for PS417_07620 only