Conservation of cofitness between Psest_3794 and Psest_1464 in Pseudomonas stutzeri RCH2

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3794 Transcriptional regulators 1.0 Psest_1464 Selenocysteine lyase 0.35 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.93 Psyr_0234 transcriptional regulator, AsnC family 0.70 Psyr_1335 Aminotransferase, class V low > 86
Pseudomonas syringae pv. syringae B728a 0.93 Psyr_0234 transcriptional regulator, AsnC family 0.70 Psyr_1335 Aminotransferase, class V low > 86
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_09160 AsnC family transcriptional regulator 0.71 AO353_16430 cysteine sulfinate desulfinase low > 101
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_2143 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system 0.73 Pf1N1B4_3076 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA low > 87
Pseudomonas sp. RS175 0.92 PFR28_04400 Leucine-responsive regulatory protein 0.71 PFR28_00389 Cysteine desulfurase SufS low > 88
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_811 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system 0.72 PfGW456L13_4717 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA low > 87
Pseudomonas putida KT2440 0.92 PP_5271 DNA-binding transcriptional dual regulator, leucine-binding 0.72 PP_1529 Probable cysteine desulfurase low > 96
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS29385 AsnC family transcriptional regulator 0.72 PFLU_RS06240 cysteine desulfurase low > 109
Pseudomonas simiae WCS417 0.92 PS417_27710 AsnC family transcriptional regulator 0.73 PS417_06175 cysteine sulfinate desulfinase low > 88
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_12615 AsnC family transcriptional regulator 0.73 AO356_06075 cysteine sulfinate desulfinase 0.37 10
Pseudomonas fluorescens SBW25 0.92 PFLU_RS29385 AsnC family transcriptional regulator 0.72 PFLU_RS06240 cysteine desulfurase low > 109
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_4390 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system 0.73 Pf6N2E2_3079 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA low > 103
Pseudomonas sp. S08-1 0.91 OH686_13680 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system 0.73 OH686_06515 Cysteine desulfurase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.81 Xcc-8004.4622.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system 0.37 Xcc-8004.1697.1 Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Rhodanobacter denitrificans MT42 0.77 LRK55_RS00365 winged helix-turn-helix transcriptional regulator 0.35 LRK55_RS02830 cysteine desulfurase
Rhodanobacter denitrificans FW104-10B01 0.77 LRK54_RS00595 winged helix-turn-helix transcriptional regulator 0.35 LRK54_RS03080 cysteine desulfurase
Rhodanobacter sp. FW510-T8 0.77 OKGIIK_06660 lrp AsnC family transcriptional regulator 0.36 OKGIIK_09950 sufS,csdA cysteine desulfurase CsdA
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS04590 AsnC family transcriptional regulator 0.18 RR42_RS21580 cysteine desulfurase low > 128
Castellaniella sp019104865 MT123 0.63 ABCV34_RS10805 winged helix-turn-helix transcriptional regulator 0.41 ABCV34_RS04680 cysteine desulfurase
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_09530 leucine-responsive transcriptional regulator Lrp 0.43 CSW01_11740 cysteine desulfurase CsdA
Erwinia tracheiphila SCR3 0.58 LU632_RS09740 lrp leucine-responsive transcriptional regulator Lrp 0.39 LU632_RS11075 sufS cysteine desulfurase SufS
Pantoea sp. MT58 0.58 IAI47_12915 leucine-responsive transcriptional regulator Lrp 0.40 IAI47_10860 cysteine desulfurase SufS
Escherichia coli BW25113 0.58 b0889 lrp DNA-binding transcriptional dual regulator, leucine-binding (NCBI) 0.38 b2810 csdA cysteine sulfinate desulfinase (NCBI) low > 76
Escherichia coli ECRC99 0.58 KEDOAH_22160 lrp leucine-responsive transcriptional regulator Lrp 0.38 KEDOAH_08025 csdA cysteine desulfurase CsdA
Escherichia coli ECRC98 0.58 JDDGAC_09385 lrp leucine-responsive transcriptional regulator Lrp 0.38 JDDGAC_23770 csdA cysteine desulfurase CsdA
Escherichia coli ECOR38 0.58 HEPCGN_22935 lrp leucine-responsive transcriptional regulator Lrp 0.38 HEPCGN_19360 csdA cysteine desulfurase CsdA low > 85
Escherichia fergusonii Becca 0.58 EFB2_03172 Leucine-responsive regulatory protein 0.38 EFB2_01107 Cysteine desulfurase CsdA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF4893 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system 0.39 GFF3562 Cysteine desulfurase (EC 2.8.1.7), SufS subfamily low > 78
Dickeya dianthicola 67-19 0.58 HGI48_RS09605 leucine-responsive transcriptional regulator Lrp 0.40 HGI48_RS12825 cysteine desulfurase SufS low > 71
Escherichia coli Nissle 1917 0.58 ECOLIN_RS04730 leucine-responsive transcriptional regulator Lrp 0.38 ECOLIN_RS15660 cysteine desulfurase CsdA low > 52
Klebsiella michiganensis M5al 0.58 BWI76_RS09655 leucine-responsive regulatory protein 0.38 BWI76_RS16980 bifunctional cysteine desulfurase/selenocysteine lyase low > 92
Escherichia coli ECRC101 0.58 MCAODC_24965 lrp leucine-responsive transcriptional regulator Lrp 0.38 MCAODC_10630 csdA cysteine desulfurase CsdA
Escherichia coli ECRC102 0.58 NIAGMN_03295 lrp leucine-responsive transcriptional regulator Lrp 0.38 NIAGMN_17875 csdA cysteine desulfurase CsdA
Dickeya dadantii 3937 0.58 DDA3937_RS09590 leucine-responsive transcriptional regulator Lrp 0.39 DDA3937_RS12760 cysteine desulfurase SufS low > 74
Enterobacter asburiae PDN3 0.58 EX28DRAFT_2043 transcriptional regulator, AsnC family 0.39 EX28DRAFT_2886 cysteine desulfurase, catalytic subunit CsdA low > 76
Escherichia coli BL21 0.58 ECD_00893 leucine-responsive global transcriptional regulator 0.38 ECD_02661 cysteine sulfinate desulfinase 0.64 13
Enterobacter sp. TBS_079 0.58 MPMX20_01551 Leucine-responsive regulatory protein 0.38 MPMX20_03673 Cysteine desulfurase CsdA low > 85
Escherichia coli ECRC62 0.58 BNILDI_20400 lrp leucine-responsive transcriptional regulator Lrp 0.38 BNILDI_10490 csdA cysteine desulfurase CsdA
Dickeya dianthicola ME23 0.58 DZA65_RS09915 leucine-responsive transcriptional regulator Lrp 0.40 DZA65_RS13290 cysteine desulfurase SufS low > 75
Escherichia coli ECOR27 0.58 NOLOHH_22145 lrp leucine-responsive transcriptional regulator Lrp 0.38 NOLOHH_11985 csdA cysteine desulfurase CsdA low > 57
Pectobacterium carotovorum WPP14 0.58 HER17_RS12360 leucine-responsive transcriptional regulator Lrp 0.39 HER17_RS08940 cysteine desulfurase SufS low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_02779 Leucine-responsive regulatory protein 0.38 OHPLBJKB_00921 Cysteine desulfurase CsdA low > 73
Escherichia coli ECRC101 0.58 OKFHMN_05575 lrp leucine-responsive transcriptional regulator Lrp 0.38 OKFHMN_20105 csdA cysteine desulfurase CsdA
Serratia liquefaciens MT49 0.58 IAI46_08555 leucine-responsive transcriptional regulator Lrp 0.38 IAI46_11165 cysteine desulfurase SufS low > 86
Rahnella sp. WP5 0.58 EX31_RS18530 leucine-responsive transcriptional regulator Lrp 0.41 EX31_RS13120 cysteine desulfurase CsdA low > 89
Shewanella loihica PV-4 0.57 Shew_2025 leucine-responsive transcriptional regulator (RefSeq) 0.43 Shew_0735 SufS subfamily cysteine desulfurase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.56 Sama_1771 leucine-responsive transcriptional regulator (RefSeq) 0.43 Sama_2777 aminotransferase, class V (RefSeq) low > 62
Shewanella sp. ANA-3 0.55 Shewana3_2049 leucine-responsive transcriptional regulator (RefSeq) 0.43 Shewana3_0808 cysteine desulfurase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.55 SO2305 lrp leucine-responsive regulatory protein (NCBI ptt file) 0.43 SO3789 aminotransferase, class V (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.54 MIT1002_02181 Leucine-responsive regulatory protein 0.45 MIT1002_02797 putative cysteine desulfurase
Sinorhizobium meliloti 1021 0.51 SMc00681 leucine-responsive regulatory protein 0.38 SMc00533 pyridoxal-phosphate-dependent aminotransferase
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00847 leucine-responsive regulatory protein 0.40 CCNA_01936 cysteine desulfurase/selenocysteine lyase
Caulobacter crescentus NA1000 0.50 CCNA_00847 leucine-responsive regulatory protein 0.40 CCNA_01936 cysteine desulfurase/selenocysteine lyase
Bosea sp. OAE506 0.50 ABIE41_RS07920 Lrp/AsnC ligand binding domain-containing protein 0.34 ABIE41_RS16975 cysteine desulfurase
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS13055 Lrp/AsnC ligand binding domain-containing protein 0.43 A4249_RS04590 cysteine desulfurase
Azospirillum sp. SherDot2 0.47 MPMX19_03947 Leucine-responsive regulatory protein 0.37 MPMX19_04833 Cysteine desulfurase
Marinobacter adhaerens HP15 0.42 HP15_2690 transcriptional regulator, AsnC family 0.43 HP15_2987 cysteine desulfurase, SufS subfamily
Agrobacterium fabrum C58 0.40 Atu4159 AsnC family transcriptional regulator 0.40 Atu1821 cysteine desulfurase
Rhizobium sp. OAE497 0.40 ABIE40_RS23450 Lrp/AsnC family transcriptional regulator 0.37 ABIE40_RS09990 cysteine desulfurase
Phaeobacter inhibens DSM 17395 0.36 PGA1_c11760 putative proline dehydrogenase transcriptional activator 0.38 PGA1_c15430 cysteine desulfurase SufS
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS01345 Lrp/AsnC ligand binding domain-containing protein 0.39 HMPREF1181_RS02605 cysteine desulfurase
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_16260 transcriptional regulator AsnC 0.36 CA264_08285 aminotransferase low > 74

Not shown: 17 genomes with orthologs for Psest_3794 only; 13 genomes with orthologs for Psest_1464 only