Conservation of cofitness between PS417_25395 and PS417_05820 in Pseudomonas simiae WCS417

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25395 excinuclease ABC subunit A 1.0 PS417_05820 recombinase RecX 0.34 17
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.99 PFLU_RS05890 recombination regulator RecX low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.99 PFLU_RS05890 recombination regulator RecX — —
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05194 UvrABC system protein A 0.89 GEMAOFIL_01334 Regulatory protein RecX low > 93
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.82 Pf1N1B4_3144 Regulatory protein RecX — —
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.79 PfGW456L13_4667 Regulatory protein RecX low > 87
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06855 ABC-ATPase UvrA 0.89 AO353_16810 recombinase RecX 0.42 25
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.87 AO356_05665 recombinase RecX — —
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.79 Pf6N2E2_2992 Regulatory protein RecX 0.60 11
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.85 PFR28_00473 Regulatory protein RecX low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.90 GFF2112 Regulatory protein RecX low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.81 Psyr_1379 Regulatory protein RecX — —
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.81 Psyr_1379 Regulatory protein RecX low > 86
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.79 COO64_RS19935 recX recombination regulator RecX low > 93
Pseudomonas sp. BP01 0.93 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.72 JOY50_RS23785 recX recombination regulator RecX low > 84
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.74 PP_1630 Regulatory protein RecX — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.69 OH686_18210 Regulatory protein RecX low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.69 IKLFDK_18460 recombination regulator RecX — —
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.71 Psest_2871 Uncharacterized protein conserved in bacteria — —
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.31 KEDOAH_07425 recX recombination regulator RecX — —
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.31 NIAGMN_18480 recX recombination regulator RecX low > 80
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.31 JDDGAC_24375 recX recombination regulator RecX low > 87
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.31 MCAODC_11235 recX recombination regulator RecX low > 88
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.31 EFB2_01226 Regulatory protein RecX low > 86
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.31 HEPCGN_19905 recX recombination regulator RecX low > 88
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.31 ECOLIN_RS15055 recombination regulator RecX low > 55
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.31 OKFHMN_20710 recX recombination regulator RecX low > 79
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.31 b2698 recX RecA regulator RecX (NCBI) 0.19 51
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.31 BNILDI_11110 recX recombination regulator RecX low > 75
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.31 NOLOHH_12550 recX recombination regulator RecX low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.31 OHPLBJKB_01036 Regulatory protein RecX low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.29 GFF4692 Regulatory protein RecX low > 78
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.31 ECD_02548 regulatory protein for RecA 0.65 16
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.32 DDA3937_RS16240 recombination regulator RecX low > 74
Klebsiella pneumoniae MKP103 0.77 KDGMDA_10400 excinuclease ABC subunit UvrA 0.32 KDGMDA_02845 recombination regulator RecX low > 95
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.32 HGI48_RS16350 recombination regulator RecX low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.32 DZA65_RS17445 recombination regulator RecX low > 75
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.26 HP15_1237 regulatory protein RecX-like protein 0.45 36
Enterobacter sp. TBS_079 0.76 MPMX20_00276 UvrABC system protein A 0.29 MPMX20_03579 Regulatory protein RecX low > 85
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.31 BWI76_RS22175 recombination regulator RecX — —
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.40 B158DRAFT_1532 Uncharacterized protein conserved in bacteria 0.52 34
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.26 HER17_RS05050 recombination regulator RecX low > 75
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.28 EX28DRAFT_2784 Uncharacterized protein conserved in bacteria low > 76
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.22 MIT1002_01127 Regulatory protein RecX low > 70
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.32 PagCFBP13505_RS16665 regulatory protein RecX low > 74
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.29 IAI46_03845 recombination regulator RecX low > 86
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.27 CSW01_02880 regulatory protein RecX low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.32 IAI47_04305 regulatory protein RecX low > 76
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.28 OLJFJH_09580 recombination regulator RecX low > 58
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.29 Sama_1047 hypothetical protein (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.19 LU632_RS15730 recombination regulator RecX low > 74
Shewanella loihica PV-4 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.23 Shew_1216 regulatory protein RecX (RefSeq) low > 60
Dechlorosoma suillum PS 0.74 Dsui_1622 excinuclease ABC, A subunit 0.27 Dsui_0706 hypothetical protein low > 51
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.31 Xcc-8004.3108.1 Regulatory protein RecX low > 74
Methylophilus sp. DMC18 0.71 GFF2008 UvrABC system protein A 0.25 GFF842 Regulatory protein RecX low > 43
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.26 LRK53_RS13635 recombination regulator RecX low > 59
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.28 OKGIIK_03745 recX recombination regulator RecX low > 52
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.26 ABZR87_RS07970 recombination regulator RecX low > 80
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.22 HSERO_RS03275 regulatory protein RecX 0.70 3
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.28 RS_RS02765 regulatory protein RecX low > 80
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.27 RPSI07_RS21255 recombination regulator RecX — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.29 RALBFv3_RS12015 recombination regulator RecX low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.30 UW163_RS01620 recombination regulator RecX — —
Acinetobacter baumannii LAC-4 0.69 RR41_RS01040 excinuclease ABC subunit UvrA 0.23 RR41_RS08105 recombination regulator RecX — —
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.22 RR42_RS03085 RecX family transcriptional regulator 0.35 25
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.23 MPMX26_01307 Regulatory protein RecX low > 36
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.27 GFF5391 Regulatory protein RecX — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.32 GFF2501 Regulatory protein RecX — —
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.28 ABID97_RS02270 recombination regulator RecX low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.24 Ac3H11_1254 Regulatory protein RecX 0.40 26
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.26 ABCV34_RS04455 recombination regulator RecX low > 48

Not shown: 48 genomes with orthologs for PS417_25395 only; 1 genomes with orthologs for PS417_05820 only