Conservation of cofitness between EX31_RS07960 and EX31_RS13200 in Rahnella sp. WP5

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 EX31_RS13200 phosphoenolpyruvate--protein phosphotransferase 0.63 14
Serratia liquefaciens MT49 0.72 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 IAI46_20450 phosphoenolpyruvate--protein phosphotransferase low > 86
Pectobacterium carotovorum WPP14 0.66 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 HER17_RS16580 phosphoenolpyruvate--protein phosphotransferase low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 HGI48_RS04960 phosphoenolpyruvate--protein phosphotransferase low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 DDA3937_RS04950 phosphoenolpyruvate--protein phosphotransferase low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 DZA65_RS05300 phosphoenolpyruvate--protein phosphotransferase low > 75
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.80 EX28DRAFT_2904 phosphoenolpyruvate-protein phosphotransferase low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 MPMX20_03692 Phosphoenolpyruvate-dependent phosphotransferase system low > 85
Pantoea sp. MT58 0.60 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 IAI47_03920 phosphoenolpyruvate--protein phosphotransferase low > 76
Escherichia coli ECOR38 0.60 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 HEPCGN_19260 ptsP phosphoenolpyruvate--protein phosphotransferase low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 ECOLIN_RS15875 phosphoenolpyruvate--protein phosphotransferase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 OHPLBJKB_00901 Phosphoenolpyruvate-dependent phosphotransferase system low > 73
Escherichia coli BW25113 0.60 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.80 b2829 ptsP fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) low > 76
Escherichia coli ECRC99 0.60 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 KEDOAH_08125 ptsP phosphoenolpyruvate--protein phosphotransferase — —
Escherichia coli ECRC101 0.60 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 MCAODC_10530 ptsP phosphoenolpyruvate--protein phosphotransferase low > 87
Escherichia coli ECRC102 0.60 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 NIAGMN_17775 ptsP phosphoenolpyruvate--protein phosphotransferase — —
Escherichia coli ECRC98 0.60 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 JDDGAC_23670 ptsP phosphoenolpyruvate--protein phosphotransferase low > 86
Escherichia coli ECRC100 0.60 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 OKFHMN_20005 ptsP phosphoenolpyruvate--protein phosphotransferase low > 80
Escherichia coli ECOR27 0.59 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 NOLOHH_11890 ptsP phosphoenolpyruvate--protein phosphotransferase low > 75
Escherichia coli ECRC62 0.59 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 BNILDI_10370 ptsP phosphoenolpyruvate--protein phosphotransferase low > 75
Escherichia fergusonii Becca 0.59 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 EFB2_01055 Phosphoenolpyruvate-dependent phosphotransferase system low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.81 GFF1311 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 78
Escherichia coli BL21 0.59 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.80 ECD_02677 PEP-protein phosphotransferase enzyme I; GAF domain containing protein low > 61
Klebsiella michiganensis M5al 0.59 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.78 BWI76_RS23270 phosphoenolpyruvate--protein phosphotransferase PtsP low > 92
Erwinia tracheiphila SCR3 0.55 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 LU632_RS06110 ptsP phosphoenolpyruvate--protein phosphotransferase low > 74
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 CSW01_03525 phosphoenolpyruvate-protein phosphotransferase PtsP 0.52 13
Shewanella amazonensis SB2B 0.41 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.40 Sama_0864 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) low > 62
Shewanella oneidensis MR-1 0.41 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.39 SO1332 ptsP phosphoenolpyruvate-protein phosphotransferase PtsP (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.39 Shewana3_3042 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.38 Shew_1039 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) 0.47 28
Marinobacter adhaerens HP15 0.34 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.41 HP15_463 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein low > 73
Pseudomonas stutzeri RCH2 0.34 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.41 Psest_3862 phosphoenolpyruvate-protein phosphotransferase low > 67
Acinetobacter radioresistens SK82 0.32 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 MPMX26_00341 Phosphoenolpyruvate-dependent phosphotransferase system low > 36
Pseudomonas sp. S08-1 0.32 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.41 OH686_11430 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 80
Pseudomonas sp. RS175 0.31 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 PFR28_04830 Phosphoenolpyruvate-dependent phosphotransferase system 0.28 79
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_19055 23S rRNA methyltransferase 0.40 AO356_10350 phosphoenolpyruvate-protein phosphotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.40 Pf6N2E2_3942 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 103
Pseudomonas simiae WCS417 0.31 PS417_20155 23S rRNA methyltransferase 0.41 PS417_26985 phosphoenolpyruvate-protein phosphotransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.40 Pf1N1B4_2284 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 87
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase low > 109
Pseudomonas fluorescens SBW25 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.41 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase low > 109
Alteromonas macleodii MIT1002 0.30 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.42 MIT1002_00648 Phosphoenolpyruvate-protein phosphotransferase low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.40 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.40 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase low > 86
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.40 PfGW456L13_953 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated low > 87
Pseudomonas putida KT2440 0.29 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) low > 96
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_02715 23S rRNA methyltransferase 0.40 AO353_08465 phosphoenolpyruvate-protein phosphotransferase low > 101
Dinoroseobacter shibae DFL-12 0.16 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.22 Dshi_2062 PTSINtr with GAF domain, PtsP (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.15 SMc00974 RNA methyltransferase 0.26 SMc02437 phosphoenolpyruvate phosphotransferase PTSP (enzyme I-Ntr) protein — —
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.26 TX73_003130 phosphoenolpyruvate--protein phosphotransferase low > 86
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.24 AMB_RS08150 phosphoenolpyruvate--protein phosphotransferase 0.52 8
Bosea sp. OAE506 0.15 ABIE41_RS22255 RNA methyltransferase 0.26 ABIE41_RS23820 phosphoenolpyruvate--protein phosphotransferase low > 77
Caulobacter crescentus NA1000 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.25 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP low > 66
Caulobacter crescentus NA1000 Δfur 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.25 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP low > 67
Phaeobacter inhibens DSM 17395 0.14 PGA1_c34810 putative RNA methyltransferase 0.23 PGA1_c23500 phosphoenolpyruvate-protein phosphotransferase PtsP low > 62
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.26 AZOBR_RS18900 peptidase low > 97
Rhizobium sp. OAE497 0.13 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.25 ABIE40_RS17300 phosphoenolpyruvate--protein phosphotransferase — —
Agrobacterium fabrum C58 0.13 Atu0735 RNA methyltransferase 0.25 Atu4173 phosphoenolpyruvate-protein phosphotransferase low > 89
Azospirillum sp. SherDot2 0.13 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 MPMX19_02675 Phosphoenolpyruvate-dependent phosphotransferase system low > 112
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.23 Ga0059261_2514 phosphoenolpyruvate-protein phosphotransferase low > 68
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.25 Rru_A0745 PTSINtr with GAF domain, PtsP (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.24 A4249_RS14485 phosphoenolpyruvate--protein phosphotransferase low > 48

Not shown: 35 genomes with orthologs for EX31_RS07960 only; 0 genomes with orthologs for EX31_RS13200 only