Conservation of cofitness between EX28DRAFT_3732 and EX28DRAFT_2945 in Enterobacter asburiae PDN3

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_3732 poly(A) polymerase 1.0 EX28DRAFT_2945 tyrosine recombinase XerD 0.67 7
Enterobacter sp. TBS_079 0.89 MPMX20_00829 Poly(A) polymerase I 0.98 MPMX20_03753 Tyrosine recombinase XerD low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.93 GFF2991 Tyrosine recombinase XerD low > 78
Escherichia fergusonii Becca 0.85 EFB2_03901 Poly(A) polymerase I 0.93 EFB2_01007 Tyrosine recombinase XerD low > 86
Escherichia coli BL21 0.85 ECD_00142 poly(A) polymerase 0.93 ECD_02726 site-specific tyrosine recombinase low > 61
Escherichia coli Nissle 1917 0.85 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.93 ECOLIN_RS16125 site-specific tyrosine recombinase XerD low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_03519 Poly(A) polymerase I 0.93 OHPLBJKB_00821 Tyrosine recombinase XerD low > 73
Escherichia coli ECOR38 0.85 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.92 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD low > 87
Escherichia coli ECRC101 0.85 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.93 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BW25113 0.85 b0143 pcnB poly(A) polymerase I (VIMSS) 0.93 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) low > 76
Escherichia coli ECRC98 0.85 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.93 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC102 0.85 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.92 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC100 0.85 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.93 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD low > 80
Escherichia coli ECRC99 0.85 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.93 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC62 0.85 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.93 BNILDI_10025 xerD site-specific tyrosine recombinase XerD low > 75
Escherichia coli ECOR27 0.85 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.93 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD low > 75
Klebsiella michiganensis M5al 0.82 BWI76_RS05005 polynucleotide adenylyltransferase 0.90 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Erwinia tracheiphila SCR3 0.78 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.83 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Dickeya dadantii 3937 0.77 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.85 DDA3937_RS03300 site-specific tyrosine recombinase XerD low > 74
Dickeya dianthicola 67-19 0.76 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.85 HGI48_RS03440 site-specific tyrosine recombinase XerD low > 71
Dickeya dianthicola ME23 0.76 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.85 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Pantoea sp. MT58 0.76 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.86 IAI47_03820 site-specific tyrosine recombinase XerD low > 76
Serratia liquefaciens MT49 0.76 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.87 IAI46_20730 site-specific tyrosine recombinase XerD low > 86
Pectobacterium carotovorum WPP14 0.75 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.85 HER17_RS17890 site-specific tyrosine recombinase XerD low > 75
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.71 CSW01_12250 site-specific tyrosine recombinase XerD low > 62
Shewanella oneidensis MR-1 0.54 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.60 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.54 Shewana3_3406 poly(A) polymerase (RefSeq) 0.60 Shewana3_3331 tyrosine recombinase XerD (RefSeq) low > 73
Shewanella loihica PV-4 0.52 Shew_3131 poly(A) polymerase (RefSeq) 0.58 Shew_0770 tyrosine recombinase XerD (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.52 MIT1002_03692 Poly(A) polymerase I precursor 0.57 MIT1002_00786 Tyrosine recombinase XerD low > 70
Shewanella amazonensis SB2B 0.51 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.58 Sama_2739 integrase/recombinase XerD (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0058 poly(A) polymerase 0.55 B158DRAFT_2265 tyrosine recombinase XerD low > 40
Marinobacter adhaerens HP15 0.46 HP15_326 polyA polymerase 0.58 HP15_762 site-specific tyrosine recombinase XerD low > 73
Rhodanobacter denitrificans MT42 0.45 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.48 LRK55_RS04515 site-specific tyrosine recombinase XerD low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.48 LRK54_RS04735 site-specific tyrosine recombinase XerD low > 59
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.49 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD low > 52
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.49 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.48 30
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.50 Xcc-8004.4441.1 Tyrosine recombinase XerD low > 74
Lysobacter sp. OAE881 0.44 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.55 ABIE51_RS04495 site-specific tyrosine recombinase XerD low > 62
Pseudomonas putida KT2440 0.43 PP_4697 poly(A) polymerase 0.61 PP_1468 Tyrosine recombinase XerD low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0830 Poly(A) polymerase 0.58 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0830 Poly(A) polymerase 0.58 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas sp. S08-1 0.43 OH686_17255 Poly(A) polymerase 0.59 OH686_17750 tyrosine recombinase XerD low > 80
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_14395 poly(A) polymerase 0.58 AO353_04365 recombinase XerD low > 101
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.58 Pf1N1B4_3011 Tyrosine recombinase XerD low > 87
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.59 PfGW456L13_1721 Tyrosine recombinase XerD low > 87
Pseudomonas sp. RS175 0.42 PFR28_03719 Poly(A) polymerase I 0.58 PFR28_00331 Tyrosine recombinase XerD low > 88
Pseudomonas fluorescens SBW25 0.42 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.56 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.56 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas simiae WCS417 0.42 PS417_23900 poly(A) polymerase 0.57 PS417_22895 tyrosine recombinase XerD low > 88
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.57 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_16070 poly(A) polymerase 0.57 AO356_06385 recombinase XerD low > 104
Pseudomonas stutzeri RCH2 0.41 Psest_0998 poly(A) polymerase 0.58 Psest_3129 tyrosine recombinase XerD 0.21 48
Castellaniella sp019104865 MT123 0.37 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.53 ABCV34_RS00515 site-specific tyrosine recombinase XerD low > 48
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.50 ABZR87_RS00795 site-specific tyrosine recombinase XerD low > 80
Dechlorosoma suillum PS 0.36 Dsui_1515 poly(A) polymerase 0.51 Dsui_1217 tyrosine recombinase XerD low > 51
Variovorax sp. OAS795 0.33 ABID97_RS08710 polynucleotide adenylyltransferase PcnB 0.52 ABID97_RS20265 site-specific tyrosine recombinase XerD low > 91
Variovorax sp. SCN45 0.33 GFF3943 Poly(A) polymerase (EC 2.7.7.19) 0.52 GFF2772 Site-specific tyrosine recombinase XerD low > 127
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.50 Ac3H11_302 Tyrosine recombinase XerD — —
Acinetobacter radioresistens SK82 0.30 MPMX26_00543 Poly(A) polymerase I 0.47 MPMX26_00169 Tyrosine recombinase XerD — —

Not shown: 0 genomes with orthologs for EX28DRAFT_3732 only; 41 genomes with orthologs for EX28DRAFT_2945 only