Conservation of cofitness between ECD_03871 and ECD_04107 in Escherichia coli BL21

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03871 phosphomethylpyrimidine synthase 1.0 ECD_04107 trehalose-6-P hydrolase low > 61
Escherichia coli ECRC99 0.99 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.99 KEDOAH_16255 treC alpha,alpha-phosphotrehalase
Escherichia coli ECRC102 0.99 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.99 NIAGMN_09750 treC alpha,alpha-phosphotrehalase
Escherichia coli ECRC98 0.99 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.99 JDDGAC_15540 treC alpha,alpha-phosphotrehalase low > 86
Escherichia coli ECRC101 0.99 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.99 MCAODC_02405 treC alpha,alpha-phosphotrehalase low > 87
Escherichia coli ECRC100 0.99 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.99 OKFHMN_11900 treC alpha,alpha-phosphotrehalase
Escherichia coli ECOR27 0.99 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.99 NOLOHH_04165 treC alpha,alpha-phosphotrehalase low > 75
Escherichia coli ECRC62 0.99 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 1.00 BNILDI_07345 treC alpha,alpha-phosphotrehalase low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.98 ECOLIN_RS24595 alpha,alpha-phosphotrehalase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 1.00 OHPLBJKB_03796 Trehalose-6-phosphate hydrolase low > 73
Escherichia coli BW25113 0.99 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.99 b4239 treC trehalose-6-P hydrolase (NCBI) low > 76
Escherichia coli ECOR38 0.99 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 1.00 HEPCGN_10095 treC alpha,alpha-phosphotrehalase low > 87
Escherichia fergusonii Becca 0.99 EFB2_04617 Phosphomethylpyrimidine synthase 0.98 EFB2_04294 Trehalose-6-phosphate hydrolase low > 86
Enterobacter sp. TBS_079 0.95 MPMX20_00217 Phosphomethylpyrimidine synthase 0.83 MPMX20_00537 Trehalose-6-phosphate hydrolase low > 85
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.82 EX28DRAFT_3438 alpha,alpha-phosphotrehalase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4198 Thiamin biosynthesis protein ThiC 0.86 GFF921 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.86 BWI76_RS02960 glucohydrolase
Pectobacterium carotovorum WPP14 0.87 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.71 HER17_RS07195 alpha,alpha-phosphotrehalase low > 75
Rahnella sp. WP5 0.86 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.69 EX31_RS08390 alpha,alpha-phosphotrehalase low > 89
Serratia liquefaciens MT49 0.84 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.75 IAI46_02150 alpha,alpha-phosphotrehalase
Erwinia tracheiphila SCR3 0.83 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.71 LU632_RS20965 alpha,alpha-phosphotrehalase low > 74
Shewanella loihica PV-4 0.77 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.26 Shew_1889 alpha amylase, catalytic region (RefSeq) low > 60
Shewanella amazonensis SB2B 0.77 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.26 Sama_1662 alpha amylase, catalytic region (RefSeq) low > 62
Shewanella oneidensis MR-1 0.75 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.26 SO2213 oligo-1,6-glucosidase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.74 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.26 Shewana3_2311 Alpha-glucosidase (EC 3.2.1.20) (from data) low > 73
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_00335 phosphomethylpyrimidine synthase 0.57 CSW01_04665 alpha,alpha-phosphotrehalase
Pseudomonas sp. RS175 0.72 PFR28_05091 Phosphomethylpyrimidine synthase 0.28 PFR28_01852 Oligo-1,6-glucosidase 1 low > 88
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.52 PFLU_RS24710 alpha,alpha-phosphotrehalase low > 109
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_13010 thiamine biosynthesis protein ThiC 0.53 AO353_15985 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) low > 101
Pseudomonas fluorescens SBW25 0.71 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.52 PFLU_RS24710 alpha,alpha-phosphotrehalase low > 109
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.52 Pf1N1B4_835 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) low > 87
Pseudomonas simiae WCS417 0.71 PS417_02355 thiamine biosynthesis protein ThiC 0.53 PS417_23045 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) low > 88
Pseudomonas stutzeri RCH2 0.71 Psest_0477 thiamine biosynthesis protein ThiC 0.27 Psest_3785 Glycosidases low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.70 CA264_20435 phosphomethylpyrimidine synthase ThiC 0.30 CA264_04855 alpha-amylase low > 74
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.27 ABZR86_RS16975 alpha-glucosidase 0.34 44
Echinicola vietnamensis KMM 6221, DSM 17526 0.69 Echvi_3567 thiamine biosynthesis protein ThiC 0.18 Echvi_2850 Alpha-amylase (EC 3.2.1.1) (from data) low > 79
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.29 QEN71_RS19395 alpha-amylase family glycosyl hydrolase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.27 H281DRAFT_02777 alpha-glucosidase low > 103
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.26 OKGIIK_02445 amyA alpha-glucosidase low > 52
Lysobacter sp. OAE881 0.68 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.28 ABIE51_RS18995 alpha-glucosidase family protein low > 62
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.1066.1 hypothetical protein 0.27 Xcc-8004.2057.1 Maltodextrin glucosidase (EC 3.2.1.20) low > 74
Azospirillum brasilense Sp245 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase 0.30 AZOBR_RS25735 alpha-amylase low > 97
Phaeobacter inhibens DSM 17395 0.64 PGA1_c09110 thiamine biosynthesis protein ThiC 0.25 PGA1_c07890 cytoplasmic trehalase (AlgA) (from data) low > 62
Dinoroseobacter shibae DFL-12 0.64 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) 0.24 Dshi_1649 alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) (from data)
Caulobacter crescentus NA1000 0.63 CCNA_02109 thiamine biosynthesis protein thiC 0.26 CCNA_02368 alpha-glucosidase low > 66
Caulobacter crescentus NA1000 Δfur 0.63 CCNA_02109 thiamine biosynthesis protein thiC 0.26 CCNA_02368 alpha-glucosidase low > 67
Variovorax sp. SCN45 0.63 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) 0.22 GFF6332 Maltodextrin glucosidase (EC 3.2.1.20) low > 127
Agrobacterium fabrum C58 0.63 Atu2569 thiamine biosynthesis protein 0.26 Atu0594 alpha-glucosidase low > 89
Sinorhizobium meliloti 1021 0.63 SM_b20615 thiamine biosynthesis protein ThiC 0.26 SMc01532 alpha-glycosylase low > 103
Variovorax sp. OAS795 0.63 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC 0.29 ABID97_RS12090 alpha-amylase family glycosyl hydrolase low > 91
Azospirillum sp. SherDot2 0.63 MPMX19_00336 Phosphomethylpyrimidine synthase 0.19 MPMX19_01623 Trehalose synthase/amylase TreS low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS15715 phosphomethylpyrimidine synthase ThiC 0.26 A4249_RS09955 alpha-amylase family glycosyl hydrolase low > 48
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_2424 hydroxymethylpyrimidine synthase 0.27 Ga0059261_1580 Glycosidases low > 68
Rhodopseudomonas palustris CGA009 0.60 TX73_018540 phosphomethylpyrimidine synthase ThiC 0.29 TX73_024730 alpha-amylase family glycosyl hydrolase low > 86
Rhodospirillum rubrum S1H 0.58 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) 0.26 Rru_A2294 Alpha amylase, catalytic region (NCBI) low > 58
Mycobacterium tuberculosis H37Rv 0.51 Rv0423c Probable thiamine biosynthesis protein ThiC 0.22 Rv2471 Probable alpha-glucosidase AglA (maltase) (glucoinvertase) (glucosidosucrase) (maltase-glucoamylase) (lysosomal alpha-glucosidase) (acid maltase)

Not shown: 38 genomes with orthologs for ECD_03871 only; 4 genomes with orthologs for ECD_04107 only