Conservation of cofitness between ECD_03274 and ECD_03106 in Escherichia coli BL21

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03274 DNA-binding transcriptional repressor 1.0 ECD_03106 ribonuclease G 0.59 10
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00281 Glycerol-3-phosphate regulon repressor 1.00 OHPLBJKB_00458 Ribonuclease G low > 73
Escherichia coli ECOR38 0.99 HEPCGN_15760 glpR DeoR/GlpR family transcriptional regulator 1.00 HEPCGN_16610 rng ribonuclease G low > 87
Escherichia coli BW25113 0.99 b3423 glpR DNA-binding transcriptional repressor (NCBI) 1.00 b3247 cafA bundles of cytoplasmic filaments (VIMSS) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_08735 glpR DeoR/GlpR family transcriptional regulator 1.00 NOLOHH_09530 rng ribonuclease G 0.78 23
Escherichia coli ECRC62 0.99 BNILDI_02780 glpR DeoR/GlpR family transcriptional regulator 1.00 BNILDI_01990 rng ribonuclease G low > 75
Escherichia coli ECRC98 0.99 JDDGAC_20570 glpR DeoR/GlpR family transcriptional regulator 1.00 JDDGAC_21370 rng ribonuclease G low > 86
Escherichia coli ECRC99 0.99 KEDOAH_11200 glpR DeoR/GlpR family transcriptional regulator 1.00 KEDOAH_10405 rng ribonuclease G
Escherichia coli ECRC100 0.99 OKFHMN_16940 glpR DeoR/GlpR family transcriptional regulator 1.00 OKFHMN_17745 rng ribonuclease G 0.83 12
Escherichia coli ECRC102 0.99 NIAGMN_14710 glpR DeoR/GlpR family transcriptional regulator 1.00 NIAGMN_15505 rng ribonuclease G
Escherichia coli ECRC101 0.99 MCAODC_07470 glpR DeoR/GlpR family transcriptional regulator 1.00 MCAODC_08265 rng ribonuclease G low > 87
Escherichia fergusonii Becca 0.98 EFB2_00406 Glycerol-3-phosphate regulon repressor 1.00 EFB2_00584 Ribonuclease G low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS19540 DeoR/GlpR family transcriptional regulator 1.00 ECOLIN_RS18605 ribonuclease G
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF590 Glycerol-3-phosphate regulon repressor, DeoR family 0.95 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.73 44
Enterobacter asburiae PDN3 0.91 EX28DRAFT_4123 transcriptional regulator, DeoR family 0.94 EX28DRAFT_3297 ribonuclease, Rne/Rng family 0.65 70
Klebsiella michiganensis M5al 0.90 BWI76_RS26175 DeoR/GlpR family transcriptional regulator 0.95 BWI76_RS25480 ribonuclease E/G low > 92
Enterobacter sp. TBS_079 0.90 MPMX20_04306 Glycerol-3-phosphate regulon repressor 0.94 MPMX20_04153 Ribonuclease G 0.36 75
Dickeya dadantii 3937 0.81 DDA3937_RS19670 DeoR/GlpR family transcriptional regulator 0.90 DDA3937_RS01450 ribonuclease G low > 74
Pectobacterium carotovorum WPP14 0.81 HER17_RS01530 DeoR/GlpR family transcriptional regulator 0.90 HER17_RS20150 ribonuclease G low > 75
Dickeya dianthicola ME23 0.81 DZA65_RS20890 DeoR/GlpR family transcriptional regulator 0.90 DZA65_RS01430 ribonuclease G
Dickeya dianthicola 67-19 0.81 HGI48_RS19800 DeoR/GlpR family transcriptional regulator 0.90 HGI48_RS01370 ribonuclease G low > 71
Pantoea sp. MT58 0.80 IAI47_01765 DeoR/GlpR family transcriptional regulator 0.86 IAI47_02455 ribonuclease G low > 76
Serratia liquefaciens MT49 0.79 IAI46_23910 DeoR/GlpR family transcriptional regulator 0.89 IAI46_22700 ribonuclease G low > 86
Rahnella sp. WP5 0.79 EX31_RS04995 DeoR/GlpR family transcriptional regulator 0.88 EX31_RS12255 ribonuclease G low > 89
Erwinia tracheiphila SCR3 0.78 LU632_RS23005 DeoR/GlpR family transcriptional regulator 0.88 LU632_RS21430 rng ribonuclease G low > 74
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_18830 DeoR/GlpR family transcriptional regulator 0.80 CSW01_02205 ribonuclease E/G low > 62
Pseudomonas sp. RS175 0.57 PFR28_03369 Glycerol-3-phosphate regulon repressor 0.55 PFR28_00158 Ribonuclease G low > 88
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5573 Glycerol-3-phosphate regulon repressor, DeoR family 0.55 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 103
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_3906 regulatory protein, DeoR 0.55 Psyr_4159 RNAse G low > 86
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_18245 DeoR family transcriptional regulator 0.56 AO356_07110 ribonuclease G low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_3906 regulatory protein, DeoR 0.55 Psyr_4159 RNAse G low > 86
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_04185 DeoR family transcriptional regulator 0.55 AO353_05230 ribonuclease G 0.30 46
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_768 Glycerol-3-phosphate regulon repressor, DeoR family 0.56 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)
Pseudomonas simiae WCS417 0.56 PS417_05570 DeoR faimly transcriptional regulator 0.56 PS417_04270 ribonuclease G low > 88
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_1733 Glycerol-3-phosphate regulon repressor, DeoR family 0.55 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.26 68
Pseudomonas putida KT2440 0.56 PP_1074 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate 0.55 PP_0937 endoribonuclease G (RNAse G) low > 96
Pseudomonas fluorescens SBW25 0.56 PFLU_RS05655 DeoR/GlpR family transcriptional regulator 0.56 PFLU_RS04325 ribonuclease G low > 109
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS05655 DeoR/GlpR family transcriptional regulator 0.56 PFLU_RS04325 ribonuclease G low > 109
Pseudomonas stutzeri RCH2 0.54 Psest_2774 Transcriptional regulators of sugar metabolism 0.56 Psest_3323 ribonuclease, Rne/Rng family
Pseudomonas sp. S08-1 0.54 OH686_20365 Glycerol-3-phosphate regulon repressor GlpR 0.56 OH686_08595 Ribonuclease G low > 80
Alteromonas macleodii MIT1002 0.52 MIT1002_00199 Glycerol-3-phosphate regulon repressor 0.73 MIT1002_00224 Ribonuclease G low > 70
Marinobacter adhaerens HP15 0.52 HP15_2167 transcriptional repressor for the dissimilation of sn-glycerol 3-phosphate, DeoR family protein 0.57 HP15_2451 ribonuclease, Rne/Rng family low > 73
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.472.1 Glycerol-3-phosphate regulon repressor, DeoR family 0.53 Xcc-8004.1880.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 74
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS02250 DeoR/GlpR family DNA-binding transcription regulator 0.57 QEN71_RS24430 ribonuclease G low > 153
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS16470 DeoR faimly transcriptional regulator 0.57 BPHYT_RS06375 ribonuclease low > 109
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04225 transcriptional regulator, DeoR family 0.57 H281DRAFT_04515 RNAse G low > 103
Variovorax sp. SCN45 0.46 GFF2678 Glycerol-3-phosphate regulon repressor GlpR 0.52 GFF295 Ribonuclease G low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF2808 Glycerol-3-phosphate regulon repressor, DeoR family 0.50 GFF4531 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)
Paraburkholderia graminis OAS925 0.45 ABIE53_003465 DeoR family glycerol-3-phosphate regulon repressor 0.57 ABIE53_001538 ribonuclease G low > 113
Ralstonia solanacearum PSI07 0.45 RPSI07_RS09890 DeoR/GlpR transcriptional regulator 0.50 RPSI07_RS13650 ribonuclease G
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS13795 DeoR family transcriptional regulator 0.51 RR42_RS04700 ribonuclease G
Ralstonia solanacearum UW163 0.45 UW163_RS06265 DeoR/GlpR transcriptional regulator 0.50 UW163_RS10095 ribonuclease G
Ralstonia solanacearum GMI1000 0.45 RS_RS15295 DeoR/GlpR transcriptional regulator 0.50 RS_RS11025 ribonuclease G
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS07355 DeoR/GlpR transcriptional regulator 0.50 RALBFv3_RS03575 ribonuclease G
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS03015 DeoR/GlpR family DNA-binding transcription regulator 0.51 ABZR87_RS15440 ribonuclease G 0.39 65
Variovorax sp. OAS795 0.44 ABID97_RS19960 DeoR/GlpR family DNA-binding transcription regulator 0.52 ABID97_RS16705 ribonuclease G
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS04835 DeoR faimly transcriptional regulator 0.53 HSERO_RS17790 ribonuclease
Azospirillum brasilense Sp245 0.43 AZOBR_RS25600 DeoR faimly transcriptional regulator 0.22 AZOBR_RS19540 ribonuclease E
Rhodanobacter denitrificans MT42 0.25 LRK55_RS01610 DeoR/GlpR family DNA-binding transcription regulator 0.50 LRK55_RS03155 ribonuclease G low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS01820 DeoR/GlpR family DNA-binding transcription regulator 0.50 LRK54_RS03405 ribonuclease G low > 59
Fusobacterium nucleatum SB010 0.23 HUW76_01930 DeoR/GlpR transcriptional regulator 0.23 HUW76_02260 ribonuclease E/G low > 35

Not shown: 7 genomes with orthologs for ECD_03274 only; 19 genomes with orthologs for ECD_03106 only