Conservation of cofitness between ECD_02630 and ECD_02767 in Escherichia coli BL21

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 1.0 ECD_02767 agmatinase 0.48 41
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 OHPLBJKB_00779 Agmatinase low > 73
Escherichia coli BW25113 1.00 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 1.00 b2937 speB agmatinase (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 BNILDI_09765 speB agmatinase low > 75
Escherichia coli ECOR27 0.99 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NOLOHH_11185 speB agmatinase low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 ECOLIN_RS16340 agmatinase low > 55
Escherichia coli ECRC100 0.99 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OKFHMN_19315 speB agmatinase low > 80
Escherichia coli ECRC102 0.99 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NIAGMN_17080 speB agmatinase — —
Escherichia coli ECRC98 0.99 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 JDDGAC_22945 speB agmatinase low > 86
Escherichia coli ECRC99 0.99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 KEDOAH_08825 speB agmatinase — —
Escherichia coli ECRC101 0.99 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 MCAODC_09835 speB agmatinase low > 87
Escherichia fergusonii Becca 0.98 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 EFB2_00964 Agmatinase low > 86
Escherichia coli ECOR38 0.98 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 HEPCGN_18620 speB agmatinase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.95 GFF3030 Agmatinase (EC 3.5.3.11) low > 78
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.98 EX28DRAFT_2977 agmatinase low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.98 MPMX20_03798 Agmatinase low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.98 BWI76_RS24025 agmatinase low > 92
Pantoea sp. MT58 0.64 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 IAI47_03665 agmatinase low > 76
Serratia liquefaciens MT49 0.63 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 IAI46_21135 agmatinase low > 86
Erwinia tracheiphila SCR3 0.59 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 LU632_RS05515 speB agmatinase low > 74
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 CSW01_18230 agmatinase low > 62
Shewanella loihica PV-4 0.44 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.64 Shew_1621 agmatinase (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.10 Xcc-8004.4985.1 Arginase (EC 3.5.3.1) low > 74
Rhodanobacter denitrificans MT42 0.35 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.10 LRK55_RS05685 arginase low > 63
Castellaniella sp019104865 MT123 0.35 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.16 ABCV34_RS07740 agmatinase low > 48
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.10 LRK54_RS05930 arginase low > 59
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.10 OKGIIK_00690 rocF arginase low > 52
Pseudomonas simiae WCS417 0.34 PS417_20155 23S rRNA methyltransferase 0.29 PS417_20180 agmatinase low > 88
Pseudomonas sp. S08-1 0.33 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.31 OH686_11355 agmatinase low > 80
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.29 PFLU_RS22120 agmatinase low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.29 PFLU_RS22120 agmatinase low > 109
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.50 Pf1N1B4_4717 Agmatinase (EC 3.5.3.11) low > 87
Pseudomonas sp. RS175 0.32 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.30 PFR28_00778 Guanidinobutyrase low > 88
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_19055 23S rRNA methyltransferase 0.30 AO356_04095 agmatinase low > 104
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 ABZR87_RS16040 agmatinase low > 80
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.30 Pf6N2E2_2655 Agmatinase (EC 3.5.3.11) low > 103
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS14825 23S rRNA methyltransferase 0.34 HSERO_RS08555 agmatinase low > 78
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS09125 23S rRNA methyltransferase 0.43 BPHYT_RS26640 agmatinase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.32 H281DRAFT_00178 agmatinase low > 103
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS13170 23S rRNA methyltransferase 0.30 RR42_RS02455 agmatinase low > 128
Ralstonia solanacearum GMI1000 0.31 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.16 RS_RS24710 arginase low > 80
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.17 RALBFv3_RS16300 arginase low > 76
Ralstonia solanacearum UW163 0.30 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.17 UW163_RS17040 arginase — —
Pseudomonas putida KT2440 0.30 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 PP_2196 agmatinase low > 96
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_02715 23S rRNA methyltransferase 0.30 AO353_18400 agmatinase low > 101
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.16 RPSI07_RS07400 arginase low > 81
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.50 PfGW456L13_2989 Agmatinase (EC 3.5.3.11) low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.30 GFF2044 Agmatinase (EC 3.5.3.11) low > 90
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 QEN71_RS11320 agmatinase low > 153
Variovorax sp. SCN45 0.28 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.11 GFF3772 Arginase (EC 3.5.3.1) low > 127
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.15 CA264_07575 agmatinase — —
Magnetospirillum magneticum AMB-1 0.17 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.32 AMB_RS05595 agmatinase low > 64
Azospirillum sp. SherDot2 0.16 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 MPMX19_06753 Guanidinopropionase low > 112
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.09 TX73_024575 arginase low > 86
Rhizobium sp. OAE497 0.15 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.37 ABIE40_RS06935 agmatinase low > 107
Dinoroseobacter shibae DFL-12 0.15 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.38 Dshi_1735 putative agmatinase (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.14 SMc00974 RNA methyltransferase 0.36 SMc01802 agmatinase low > 103
Agrobacterium fabrum C58 0.14 Atu0735 RNA methyltransferase 0.38 Atu1245 agmatinase low > 89
Phaeobacter inhibens DSM 17395 0.14 PGA1_c34810 putative RNA methyltransferase 0.36 PGA1_c19930 agmatinase SpeB low > 62
Bosea sp. OAE506 0.14 ABIE41_RS22255 RNA methyltransferase 0.39 ABIE41_RS19205 agmatinase low > 77

Not shown: 37 genomes with orthologs for ECD_02630 only; 3 genomes with orthologs for ECD_02767 only