| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_03395 | | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor | 1.0 | ECD_02724 | | ssDNA exonuclease, 5 | 0.55 | 4 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00162 | | Periplasmic dipeptide transport protein | 1.00 | OHPLBJKB_00823 | | Single-stranded-DNA-specific exonuclease RecJ | low | > 73 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_08040 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 1.00 | NOLOHH_11505 | recJ | single-stranded-DNA-specific exonuclease RecJ | low | > 57 |
| Escherichia coli BW25113 | 1.00 | b3544 | dppA | dipeptide transporter (NCBI) | 0.99 | b2892 | recJ | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_03520 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 1.00 | BNILDI_10035 | recJ | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_16100 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 1.00 | OKFHMN_19580 | recJ | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_06615 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 1.00 | MCAODC_10100 | recJ | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_13860 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 1.00 | NIAGMN_17345 | recJ | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_12050 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 1.00 | KEDOAH_08560 | recJ | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_19730 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 1.00 | JDDGAC_23220 | recJ | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_14960 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.99 | HEPCGN_18870 | recJ | single-stranded-DNA-specific exonuclease RecJ | low | > 85 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00263 | | Periplasmic dipeptide transport protein | 1.00 | EFB2_01009 | | Single-stranded-DNA-specific exonuclease RecJ | low | > 86 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS20280 | | dipeptide ABC transporter substrate-binding protein DppA | 0.99 | ECOLIN_RS16115 | | single-stranded-DNA-specific exonuclease RecJ | low | > 52 |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS26885 | | ABC transporter substrate-binding protein | 0.90 | BWI76_RS23805 | | ssDNA exonuclease RecJ | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF475 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.92 | GFF2989 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.93 | EX28DRAFT_3804 | | ABC-type dipeptide transport system, periplasmic component | 0.90 | EX28DRAFT_2943 | | single-stranded-DNA-specific exonuclease RecJ | low | > 76 |
| Enterobacter sp. TBS_079 | 0.93 | MPMX20_00190 | | Periplasmic dipeptide transport protein | 0.89 | MPMX20_03751 | | Single-stranded-DNA-specific exonuclease RecJ | low | > 85 |
| Serratia liquefaciens MT49 | 0.87 | IAI46_00475 | | ABC transporter substrate-binding protein | 0.79 | IAI46_20720 | | single-stranded-DNA-specific exonuclease RecJ | low | > 86 |
| Rahnella sp. WP5 | 0.86 | EX31_RS05515 | | ABC transporter substrate-binding protein | 0.76 | EX31_RS13470 | | single-stranded-DNA-specific exonuclease RecJ | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.85 | HER17_RS00220 | | ABC transporter substrate-binding protein | 0.72 | HER17_RS17880 | | single-stranded-DNA-specific exonuclease RecJ | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.84 | LU632_RS00265 | | ABC transporter substrate-binding protein | 0.73 | LU632_RS05985 | recJ | single-stranded-DNA-specific exonuclease RecJ | low | > 74 |
| Dickeya dadantii 3937 | 0.83 | DDA3937_RS00460 | | ABC transporter substrate-binding protein | 0.76 | DDA3937_RS03310 | | single-stranded-DNA-specific exonuclease RecJ | low | > 74 |
| Dickeya dianthicola ME23 | 0.83 | DZA65_RS21920 | | ABC transporter substrate-binding protein | 0.77 | DZA65_RS03495 | | single-stranded-DNA-specific exonuclease RecJ | low | > 75 |
| Dickeya dianthicola 67-19 | 0.83 | HGI48_RS20925 | | ABC transporter substrate-binding protein | 0.77 | HGI48_RS03450 | | single-stranded-DNA-specific exonuclease RecJ | low | > 71 |
| Pantoea sp. MT58 | 0.82 | IAI47_18650 | | ABC transporter substrate-binding protein | 0.77 | IAI47_03830 | | single-stranded-DNA-specific exonuclease RecJ | low | > 76 |
| Rhodospirillum rubrum S1H | 0.61 | Rru_A2356 | | extracellular solute-binding protein, family 5 (NCBI) | 0.24 | Rru_A2408 | | RecJ exonuclease (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_04419 | | Periplasmic dipeptide transport protein | 0.23 | MPMX19_00667 | | Single-stranded-DNA-specific exonuclease RecJ | — | — |
| Variovorax sp. SCN45 | 0.59 | GFF7288 | | Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) | 0.39 | GFF6700 | | Single-stranded-DNA-specific exonuclease RecJ | low | > 127 |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS04470 | | ABC transporter substrate-binding protein | 0.40 | ABID97_RS22940 | | single-stranded-DNA-specific exonuclease RecJ | low | > 91 |
| Agrobacterium fabrum C58 | 0.55 | Atu4113 | | dipeptide ABC transporter substrate-binding protein | 0.24 | Atu1586 | | single-stranded-DNA-specific exonuclease | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_05802 | | dipeptide transport system substrate-binding protein | 0.40 | H281DRAFT_00488 | | exonuclease RecJ | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS18690 | | ABC transporter | 0.40 | BPHYT_RS12730 | | single-stranded DNA exonuclease | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.54 | QEN71_RS28705 | | ABC transporter substrate-binding protein | 0.41 | QEN71_RS05835 | | single-stranded-DNA-specific exonuclease RecJ | low | > 153 |
| Rhizobium sp. OAE497 | 0.54 | ABIE40_RS03345 | | ABC transporter substrate-binding protein | 0.24 | ABIE40_RS08655 | | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Pseudomonas putida KT2440 | 0.53 | PP_0885 | | dipeptide ABC transporter - periplasmic binding protein | 0.56 | PP_1477 | | ssDNA-specific exonuclease RecJ | low | > 96 |
| Pseudomonas sp. S08-1 | 0.53 | OH686_08695 | | Dipeptide ABC transporter, substrate-binding protein DppA | 0.56 | OH686_06955 | | single-stranded-DNA-specific exonuclease RecJ | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_4236 | | extracellular solute-binding protein, family 5 | 0.57 | Psyr_1298 | | exonuclease RecJ | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_4236 | | extracellular solute-binding protein, family 5 | 0.57 | Psyr_1298 | | exonuclease RecJ | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_07240 | | peptide ABC transporter substrate-binding protein | 0.56 | AO356_06345 | | single-stranded-DNA-specific exonuclease RecJ | low | > 104 |
| Sinorhizobium meliloti 1021 | 0.52 | SMc00786 | | periplasmic dipeptide-binding protein | 0.19 | SMc00292 | | single-stranded-DNA-specific exonuclease | — | — |
| Pseudomonas sp. RS175 | 0.52 | PFR28_00131 | | Periplasmic dipeptide transport protein | 0.55 | PFR28_00339 | | Single-stranded-DNA-specific exonuclease RecJ | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_1120 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.56 | Pf1N1B4_3020 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_5051 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.55 | PfGW456L13_1730 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_04085 | | peptide ABC transporter substrate-binding protein | 0.57 | PS417_22855 | | ssDNA exonuclease RecJ | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.51 | PFLU_RS04115 | | ABC transporter substrate-binding protein | 0.56 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.51 | PFLU_RS04115 | | ABC transporter substrate-binding protein | 0.56 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_05370 | | peptide ABC transporter substrate-binding protein | 0.55 | AO353_04320 | | single-stranded-DNA-specific exonuclease RecJ | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_3307 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.56 | Pf6N2E2_3137 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | low | > 103 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_1047 | | ABC-type dipeptide transport system, periplasmic component | 0.49 | B158DRAFT_2268 | | single-stranded-DNA-specific exonuclease RecJ | low | > 40 |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_003951 | | dipeptide transport system substrate-binding protein | 0.40 | ABIE53_002771 | | single-stranded-DNA-specific exonuclease | low | > 113 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_2650 | | acetate kinase (RefSeq) | 0.58 | Shewana3_3329 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.43 | Sama_1235 | | peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) | 0.57 | Sama_2737 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.42 | SO1805 | sapA | peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) | 0.57 | SO0952 | recJ | single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.41 | Shew_2498 | | extracellular solute-binding protein (RefSeq) | 0.58 | Shew_0772 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.40 | MIT1002_01141 | | Dipeptide-binding protein | 0.53 | MIT1002_00788 | | Single-stranded-DNA-specific exonuclease RecJ | low | > 70 |
| Cupriavidus basilensis FW507-4G11 | 0.16 | RR42_RS18210 | | ABC transporter substrate-binding protein | 0.41 | RR42_RS06090 | | single-stranded DNA exonuclease | low | > 128 |
| Phaeobacter inhibens DSM 17395 | 0.16 | PGA1_262p00300 | | ABC transporter, extracellular solute-binding protein | 0.23 | PGA1_c08630 | | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Dechlorosoma suillum PS | 0.15 | Dsui_2238 | | ABC-type dipeptide transport system, periplasmic component | 0.44 | Dsui_2860 | | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.14 | CA265_RS01030 | | ABC transporter substrate-binding protein | 0.24 | CA265_RS25225 | | single-stranded-DNA-specific exonuclease RecJ | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.14 | DVU2084 | appA | oligopeptide-binding protein, putative (TIGR) | 0.22 | DVU0904 | recJ | single-stranded-DNA-specific exonuclease RecJ (TIGR) | low | > 55 |
| Dinoroseobacter shibae DFL-12 | 0.11 | Dshi_0872 | | extracellular solute-binding protein family 5 (RefSeq) | 0.22 | Dshi_2275 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | — | — |
Not shown: 3 genomes with orthologs for ECD_03395 only; 32 genomes with orthologs for ECD_02724 only