Conservation of cofitness between ECD_03509 and ECD_02667 in Escherichia coli BL21

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_02667 exonuclease V (RecBCD complex), alpha chain 0.87 2
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 1.00 b2819 recD exonuclease V (RecBCD complex), alpha chain (NCBI) 0.38 23
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 1.00 BNILDI_10420 recD exodeoxyribonuclease V subunit alpha
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_00911 RecBCD enzyme subunit RecD low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.99 ECOLIN_RS15825 exodeoxyribonuclease V subunit alpha
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 1.00 NOLOHH_11940 recD exodeoxyribonuclease V subunit alpha low > 57
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 0.99 EFB2_01065 RecBCD enzyme subunit RecD low > 86
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.99 NIAGMN_17825 recD exodeoxyribonuclease V subunit alpha
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.99 OKFHMN_20055 recD exodeoxyribonuclease V subunit alpha
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.99 JDDGAC_23720 recD exodeoxyribonuclease V subunit alpha
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.99 MCAODC_10580 recD exodeoxyribonuclease V subunit alpha
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.98 HEPCGN_19310 recD exodeoxyribonuclease V subunit alpha low > 85
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.99 KEDOAH_08075 recD exodeoxyribonuclease V subunit alpha
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.82 GFF1300 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) low > 78
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.70 EX28DRAFT_2894 DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5) low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.69 MPMX20_03682 RecBCD enzyme subunit RecD low > 85
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.69 BWI76_RS23225 exonuclease V subunit alpha low > 92
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.52 IAI47_03970 exodeoxyribonuclease V subunit alpha low > 76
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.53 IAI46_20400 exodeoxyribonuclease V subunit alpha
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.51 HER17_RS16520 exodeoxyribonuclease V subunit alpha low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.51 LU632_RS06195 recD exodeoxyribonuclease V subunit alpha
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.29 DDA3937_RS11075 exodeoxyribonuclease V subunit alpha
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.30 EX31_RS20730 exodeoxyribonuclease V subunit alpha low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.29 HGI48_RS11095 exodeoxyribonuclease V subunit alpha
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.29 DZA65_RS11475 exodeoxyribonuclease V subunit alpha
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.40 CSW01_11775 exodeoxyribonuclease V subunit alpha 0.70 16
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.33 Sama_1902 exodeoxyribonuclease V (RefSeq)
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.31 Shewana3_2247 exodeoxyribonuclease V, alpha subunit (RefSeq)
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.32 Shew_2131 exodeoxyribonuclease V, alpha subunit (RefSeq)
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.29 SO2147 recD exodeoxyribonuclease V, alpha subunit (NCBI ptt file) low > 76
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.32 PP_4672 ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.34 Psest_0214 exodeoxyribonuclease V, alpha subunit
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.32 PfGW456L13_5150 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) low > 87
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.33 Pf1N1B4_1234 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) 0.46 4
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.33 PS417_23770 exodeoxyribonuclease V subunit alpha low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.32 AO353_06040 exodeoxyribonuclease V subunit alpha low > 101
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.33 PFLU_RS25585 exodeoxyribonuclease V subunit alpha low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.33 PFLU_RS25585 exodeoxyribonuclease V subunit alpha low > 109
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.30 HP15_3712 exonuclease V subunit alpha 0.60 22
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.31 OH686_12070 exodeoxyribonuclease V, alpha subunit
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.32 PFR28_00008 RecBCD enzyme subunit RecD
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.33 AO356_07910 exodeoxyribonuclease V subunit alpha 0.39 24
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.32 Psyr_0682 DNA helicase/exodeoxyribonuclease V, alpha subunit
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.32 Psyr_0682 DNA helicase/exodeoxyribonuclease V, alpha subunit
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.20 ABIE51_RS01030 exodeoxyribonuclease V subunit alpha low > 62
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.31 ABZR86_RS07670 exodeoxyribonuclease V subunit alpha
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.20 MPMX26_00273 RecBCD enzyme subunit RecD low > 36
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.19 LRK55_RS01935 exodeoxyribonuclease V subunit alpha
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.19 LRK54_RS02185 exodeoxyribonuclease V subunit alpha low > 59
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.17 Xcc-8004.5352.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) low > 74
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.25 BPHYT_RS07980 exodeoxyribonuclease V subunit alpha
Paraburkholderia graminis OAS925 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG 0.32 ABIE53_000496 exodeoxyribonuclease V alpha subunit low > 113
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.26 QEN71_RS23185 exodeoxyribonuclease V subunit alpha
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.29 ABCV34_RS02970 exodeoxyribonuclease V subunit alpha low > 48
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.19 Rv0629c Probable exonuclease V (alpha chain) RecD (exodeoxyribonuclease V alpha chain) (exodeoxyribonuclease V polypeptide) low > 58

Not shown: 43 genomes with orthologs for ECD_03509 only; 0 genomes with orthologs for ECD_02667 only