Conservation of cofitness between ECD_02179 and ECD_02242 in Escherichia coli BL21

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02179 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent 1.0 ECD_02242 DedA family inner membrane protein 0.64 42
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01458 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 1.00 OHPLBJKB_01388 Protein DedA low > 73
Escherichia coli ECRC62 1.00 BNILDI_13535 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.92 BNILDI_13230 DedA family inner membrane protein low > 75
Escherichia coli ECOR27 0.99 NOLOHH_14620 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 1.00 NOLOHH_14310 Protein DedA low > 75
Escherichia coli ECOR38 0.99 HEPCGN_22210 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.92 HEPCGN_21880 DedA family inner membrane protein low > 87
Escherichia coli BW25113 0.99 b2253 arnB uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) 1.00 b2317 dedA conserved inner membrane protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.97 ECOLIN_RS13125 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.93 ECOLIN_RS13430 DedA family protein low > 55
Escherichia coli ECRC100 0.95 OKFHMN_22995 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 1.00 OKFHMN_22675 Protein DedA low > 80
Escherichia coli ECRC98 0.95 JDDGAC_26960 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 1.00 JDDGAC_26635 Protein DedA low > 86
Escherichia coli ECRC102 0.95 NIAGMN_20765 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 1.00 NIAGMN_20450 Protein DedA
Escherichia coli ECRC101 0.95 MCAODC_14035 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 1.00 MCAODC_13715 Protein DedA low > 87
Escherichia coli ECRC99 0.95 KEDOAH_05200 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 1.00 KEDOAH_05520 Protein DedA
Escherichia fergusonii Becca 0.95 EFB2_01603 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 0.93 EFB2_01541 Protein DedA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF1858 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) 0.98 GFF1933 DedA protein low > 78
Enterobacter sp. TBS_079 0.81 MPMX20_04380 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 0.91 MPMX20_03252 Protein DedA low > 85
Enterobacter asburiae PDN3 0.81 EX28DRAFT_4082 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 0.91 EX28DRAFT_0287 Uncharacterized membrane-associated protein low > 76
Klebsiella michiganensis M5al 0.79 BWI76_RS26485 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 0.92 BWI76_RS20375 membrane protein 0.15 18
Erwinia tracheiphila SCR3 0.78 LU632_RS16495 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.80 LU632_RS07830 DedA family protein 0.45 45
Dickeya dadantii 3937 0.78 DDA3937_RS21390 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.85 DDA3937_RS14460 DedA family protein low > 74
Dickeya dianthicola ME23 0.77 DZA65_RS22610 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.83 DZA65_RS15365 DedA family protein low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.83 HGI48_RS14430 DedA family protein low > 71
Pantoea sp. MT58 0.71 IAI47_21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.82 IAI47_06250 DedA family protein low > 76
Serratia liquefaciens MT49 0.71 IAI46_11015 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.90 IAI46_17835 DedA family protein low > 86
Rahnella sp. WP5 0.70 EX31_RS14020 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.88 EX31_RS19595 DedA family protein low > 89
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_25530 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase 0.55 AO353_06585 hypothetical protein 0.53 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase 0.51 Psyr_0626 DedA low > 86
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase 0.51 Psyr_0626 DedA low > 86
Variovorax sp. OAS795 0.40 ABID97_RS02145 DegT/DnrJ/EryC1/StrS family aminotransferase 0.51 ABID97_RS20305 DedA family protein
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS15735 pyridoxal phosphate-dependent aminotransferase 0.46 RR42_RS17200 membrane protein
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_00805 dTDP-4-amino-4,6-dideoxygalactose transaminase 0.46 H281DRAFT_04713 membrane-associated protein
Paraburkholderia graminis OAS925 0.32 ABIE53_002021 dTDP-4-amino-4,6-dideoxygalactose transaminase 0.46 ABIE53_000878 membrane-associated protein
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS22430 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.43 QEN71_RS26430 DedA family protein
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU3010 lpsC aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR) 0.50 DVU2682 DedA family protein (TIGR) low > 55
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS08930 aminotransferase DegT 0.46 BPHYT_RS03655 membrane protein
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS10435 aminotransferase DegT 0.63 HSERO_RS17220 membrane protein
Ralstonia solanacearum PSI07 0.32 RPSI07_RS17515 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.47 RPSI07_RS12090 membrane protein
Pseudomonas simiae WCS417 0.31 PS417_27245 aminotransferase DegT 0.52 PS417_24835 hypothetical protein 0.34 30
Pseudomonas fluorescens SBW25 0.31 PFLU_RS28905 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.53 PFLU_RS26770 DedA family protein 0.84 7
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS28905 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.53 PFLU_RS26770 DedA family protein low > 109
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS15850 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.47 RALBFv3_RS05210 membrane protein
Ralstonia solanacearum UW163 0.31 UW163_RS13295 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.47 UW163_RS08415 membrane protein
Ralstonia solanacearum GMI1000 0.30 RS_RS06630 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.46 RS_RS12830 membrane protein
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS11420 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.45 ABZR87_RS00865 VTT domain-containing protein 0.54 31
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_3586 DegT/DnrJ/EryC1/StrS aminotransferase 0.47 Pf1N1B4_2668 DedA protein low > 87
Pseudomonas sp. RS175 0.29 PFR28_00919 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 0.55 PFR28_03891 Protein DedA
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_2610 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase 0.58 Pf6N2E2_4974 DedA protein low > 103
Dechlorosoma suillum PS 0.27 Dsui_0082 UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase 0.48 Dsui_1547 putative membrane-associated protein
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_4370 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase 0.54 PfGW456L13_1337 DedA protein low > 87
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_07955 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 0.49 CA264_09550 hypothetical protein low > 74
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_1911 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) 0.51 DvMF_1142 SNARE associated Golgi protein (RefSeq) low > 51
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_03400 aminotransferase DegT 0.55 AO356_15200 hypothetical protein 0.42 20
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS01760 aminotransferase DegT 0.47 CA265_RS03315 hypothetical protein
Bacteroides thetaiotaomicron VPI-5482 0.23 BT0612 putative aminotransferase (NCBI ptt file) 0.62 BT4639 conserved hypothetical protein, putative membrane protein (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.23 ABZR88_RS08945 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.52 ABZR88_RS01745 DedA family protein
Variovorax sp. SCN45 0.22 GFF6876 Aminotransferase, DegT/DnrJ/EryC1/StrS family 0.50 GFF4801 DedA protein low > 127
Dyella japonica UNC79MFTsu3.2 0.21 ABZR86_RS18520 DegT/DnrJ/EryC1/StrS family aminotransferase 0.14 ABZR86_RS12835 DedA family protein low > 74
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS13755 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.65 ABI39_RS13800 DedA family protein low > 72
Acinetobacter radioresistens SK82 0.19 MPMX26_00061 GDP-perosamine synthase 0.55 MPMX26_00073 Protein DedA low > 36
Acidovorax sp. GW101-3H11 0.19 Ac3H11_1545 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase 0.51 Ac3H11_312 DedA protein
Bacteroides ovatus ATCC 8483 0.17 BACOVA_03734 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.67 BACOVA_05451 SNARE-like domain protein low > 94

Not shown: 27 genomes with orthologs for ECD_02179 only; 7 genomes with orthologs for ECD_02242 only