Conservation of cofitness between ECD_00971 and ECD_00974 in Escherichia coli BL21

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 1.0 ECD_00974 Modulator of FtsH protease, inner membrane protein 0.56 32
Escherichia coli BW25113 1.00 b0967 yccW predicted methyltransferase (RefSeq) 1.00 b0970 yccA inner membrane protein (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 ECOLIN_RS05100 FtsH protease modulator YccA — —
Escherichia coli ECOR27 0.99 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 NOLOHH_21725 yccA FtsH protease modulator YccA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 1.00 OHPLBJKB_02696 Modulator of FtsH protease YccA 0.44 17
Escherichia coli ECOR38 0.99 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 HEPCGN_23350 yccA FtsH protease modulator YccA low > 87
Escherichia coli ECRC101 0.98 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 MCAODC_24560 yccA FtsH protease modulator YccA low > 87
Escherichia coli ECRC98 0.98 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 JDDGAC_08780 yccA FtsH protease modulator YccA low > 86
Escherichia coli ECRC102 0.98 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 NIAGMN_02890 yccA FtsH protease modulator YccA — —
Escherichia coli ECRC99 0.98 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 KEDOAH_22565 yccA FtsH protease modulator YccA — —
Escherichia coli ECRC100 0.98 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 OKFHMN_05170 yccA FtsH protease modulator YccA low > 80
Escherichia coli ECRC62 0.98 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 BNILDI_19890 yccA FtsH protease modulator YccA low > 75
Escherichia fergusonii Becca 0.98 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 1.00 EFB2_03101 Modulator of FtsH protease YccA low > 86
Enterobacter asburiae PDN3 0.95 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.88 EX28DRAFT_1964 Integral membrane protein, interacts with FtsH low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.96 MPMX20_01622 Modulator of FtsH protease YccA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF3258 LSU m5C1962 methyltransferase RlmI 0.87 GFF3263 Putative TEGT family carrier/transport protein low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.91 BWI76_RS10070 BAX inhibitor protein low > 92
Pantoea sp. MT58 0.87 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.76 IAI47_12580 FtsH protease modulator YccA 0.22 36
Serratia liquefaciens MT49 0.85 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.72 IAI46_08945 FtsH protease modulator YccA low > 86
Erwinia tracheiphila SCR3 0.83 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.78 LU632_RS10105 yccA FtsH protease modulator YccA low > 74
Rahnella sp. WP5 0.82 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.69 EX31_RS17975 FtsH protease modulator YccA low > 89
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.37 CSW01_06835 BAX inhibitor protein low > 62
Shewanella amazonensis SB2B 0.61 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.37 Sama_1782 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.60 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.36 Shewana3_2060 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.59 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.36 SO2375 membrane protein, putative (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.56 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.42 MIT1002_02167 Modulator of FtsH protease YccA low > 70
Dechlorosoma suillum PS 0.48 Dsui_0653 putative SAM-dependent methyltransferase 0.33 Dsui_2145 FtsH-interacting integral membrane protein low > 51
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase 0.29 ABZR87_RS10890 Bax inhibitor-1/YccA family protein low > 80
Ralstonia solanacearum PSI07 0.48 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase 0.27 RPSI07_RS18125 BAX inhibitor (BI)-1/YccA family protein low > 81
Ralstonia solanacearum UW163 0.47 UW163_RS03910 class I SAM-dependent rRNA methyltransferase 0.28 UW163_RS12715 BAX inhibitor (BI)-1/YccA family protein — —
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase 0.28 RALBFv3_RS15250 BAX inhibitor (BI)-1/YccA family protein low > 76
Ralstonia solanacearum GMI1000 0.47 RS_RS00255 class I SAM-dependent rRNA methyltransferase 0.27 RS_RS06060 BAX inhibitor (BI)-1/YccA family protein low > 80
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.32 QEN71_RS05955 Bax inhibitor-1/YccA family protein low > 153
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.29 H281DRAFT_00512 hypothetical protein low > 103
Paraburkholderia graminis OAS925 0.45 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.30 ABIE53_002746 modulator of FtsH protease low > 113
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS01650 23S rRNA methyltransferase 0.30 BPHYT_RS12600 membrane protein — —
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS01670 23S rRNA methyltransferase 0.30 RR42_RS13165 membrane protein low > 128
Variovorax sp. SCN45 0.40 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) 0.27 GFF2840 Integral membrane protein, interacts with FtsH low > 127
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.27 Ac3H11_2845 Integral membrane protein, interacts with FtsH low > 79
Variovorax sp. OAS795 0.39 ABID97_RS06155 class I SAM-dependent methyltransferase 0.28 ABID97_RS10740 Bax inhibitor-1/YccA family protein low > 91
Pseudomonas putida KT2440 0.26 PP_5127 ribosomal RNA large subunit methyltransferase I 0.49 PP_3990 substrate or modulator of FtsH-mediated proteolysis low > 96
Pseudomonas sp. S08-1 0.26 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.55 OH686_00320 Putative TEGT family carrier/transport protein low > 80
Pseudomonas sp. RS175 0.26 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.48 PFR28_02158 Modulator of FtsH protease YccA low > 88
Pseudomonas stutzeri RCH2 0.26 Psest_0236 Predicted SAM-dependent methyltransferases 0.49 Psest_2372 Integral membrane protein, interacts with FtsH low > 67
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.50 Pf1N1B4_5690 Putative TEGT family carrier/transport protein low > 87
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_4764 SAM-dependent methyltransferase 0.50 Psyr_3164 Protein of unknown function UPF0005 low > 86
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.50 PfGW456L13_2798 Putative TEGT family carrier/transport protein low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_4764 SAM-dependent methyltransferase 0.50 Psyr_3164 Protein of unknown function UPF0005 low > 86
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_08330 SAM-dependent methyltransferase 0.49 AO353_22655 hypothetical protein low > 101
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.51 PFLU_RS18360 Bax inhibitor-1/YccA family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_13260 SAM-dependent methyltransferase 0.49 AO356_25955 hypothetical protein low > 104
Pseudomonas fluorescens SBW25 0.26 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.51 PFLU_RS18360 Bax inhibitor-1/YccA family protein low > 109
Pseudomonas simiae WCS417 0.26 PS417_26880 SAM-dependent methyltransferase 0.51 PS417_16310 membrane protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.48 Pf6N2E2_1239 Putative TEGT family carrier/transport protein low > 103
Marinobacter adhaerens HP15 0.26 HP15_460 SAM-dependent methyltransferase 0.42 HP15_1784 protein belonging to uncharacterized protein family UPF0005 low > 73

Not shown: 27 genomes with orthologs for ECD_00971 only; 8 genomes with orthologs for ECD_00974 only