Conservation of cofitness between DZA65_RS19385 and DZA65_RS06685 in Dickeya dianthicola ME23

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS06685 asparagine synthase B 0.80 17
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.00 HGI48_RS06340 asparagine synthase B 0.80 11
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.95 HER17_RS15120 asparagine synthase B low > 75
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.93 EX31_RS23245 asparagine synthase B 0.95 24
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.93 BWI76_RS08180 asparagine synthase B low > 92
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.93 EX28DRAFT_2301 asparagine synthase (glutamine-hydrolyzing) — —
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.94 ECD_00631 asparagine synthetase B low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.94 OHPLBJKB_03042 Asparagine synthetase B [glutamine-hydrolyzing] low > 73
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.94 b0674 asnB asparagine synthetase B (NCBI) low > 76
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.95 IAI46_06065 asparagine synthase B low > 86
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.94 BNILDI_21565 asnB asparagine synthase B low > 75
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.94 JDDGAC_10830 asnB asparagine synthase B low > 86
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.93 OKFHMN_07180 asnB asparagine synthase B low > 80
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.94 HEPCGN_01050 asnB asparagine synthase B low > 87
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.94 NOLOHH_23560 asnB asparagine synthase B low > 75
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.94 MCAODC_26395 asnB asparagine synthase B low > 87
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.94 NIAGMN_05235 asnB asparagine synthase B — —
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.94 KEDOAH_20790 asnB asparagine synthase B — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.92 GFF4582 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) low > 78
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.94 EFB2_03429 Asparagine synthetase B [glutamine-hydrolyzing] low > 86
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.94 ECOLIN_RS03600 asparagine synthase B low > 55
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.93 MPMX20_01320 Asparagine synthetase B [glutamine-hydrolyzing] low > 85
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.88 IAI47_13900 asparagine synthase B 0.93 3
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.87 LU632_RS16265 asnB asparagine synthase B — —
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.80 CSW01_05055 asparagine synthase B low > 62
Shewanella amazonensis SB2B 0.79 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.71 Sama_2101 asnB asparagine synthetase B (RefSeq) 0.83 7
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.72 Shew_1509 asnB asparagine synthetase B (RefSeq) 0.91 16
Shewanella oneidensis MR-1 0.76 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.73 SO2767 asnB-1 asparagine synthetase B, glutamine-hydrolyzing (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.74 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.73 Shewana3_2549 asnB asparagine synthetase B (RefSeq) 0.88 56
Alteromonas macleodii MIT1002 0.72 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.74 MIT1002_01266 Asparagine synthetase B [glutamine-hydrolyzing] 0.99 7
Pseudomonas stutzeri RCH2 0.71 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.13 Psest_2930 asparagine synthase (glutamine-hydrolyzing) — —
Pseudomonas sp. S08-1 0.71 OH686_17075 Carbamoyl-phosphate synthase small chain 0.13 OH686_20985 asparagine synthase (glutamine-hydrolyzing) — —
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.13 Pf6N2E2_2542 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) — —
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.13 PfGW456L13_2154 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.13 Pf1N1B4_374 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) — —
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_07485 carbamoyl phosphate synthase small subunit 0.13 AO356_03575 asparagine synthase — —
Pseudomonas simiae WCS417 0.70 PS417_24045 carbamoyl phosphate synthase small subunit 0.14 PS417_19230 asparagine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.14 PFLU_RS21200 N-acetylglutaminylglutamine amidotransferase — —
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.14 PFLU_RS21200 N-acetylglutaminylglutamine amidotransferase — —
Rhodanobacter denitrificans MT42 0.65 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.59 LRK55_RS18205 asparagine synthase B — —
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.56 ABIE51_RS07005 asparagine synthase B 0.67 8
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.57 Xcc-8004.3537.1 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.59 LRK54_RS00305 asparagine synthase B — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.57 ABZR86_RS02815 asparagine synthase B — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.59 OKGIIK_07005 asnB asparagine synthase B 0.79 11
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.54 GFF1173 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) — —
Azospirillum brasilense Sp245 0.51 AZOBR_RS10920 carbamoyl phosphate synthase small subunit 0.15 AZOBR_RS22535 asparagine synthase — —
Magnetospirillum magneticum AMB-1 0.51 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.16 AMB_RS06425 asparagine synthase (glutamine-hydrolyzing) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.14 A4249_RS01055 N-acetylglutaminylglutamine amidotransferase — —
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.15 MMJJ_RS00370 asparagine synthase (glutamine-hydrolyzing) — —
Methanococcus maripaludis S2 0.37 MMP_RS08170 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.15 MMP_RS04765 asparagine synthase (glutamine-hydrolyzing) — —
Bacteroides ovatus ATCC 8483 0.34 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.66 BACOVA_03758 asparagine synthase (glutamine-hydrolyzing) low > 94
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.66 ABI39_RS20695 asparagine synthase B 0.75 14
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.67 HMPREF1058_RS06930 asparagine synthase B 0.76 7
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.65 HMPREF1078_RS01260 asparagine synthase B 0.36 60
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.65 HMPREF1181_RS16045 asparagine synthase B low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.67 BT0551 asparagine synthetase B [glutamine-hydrolyzing] (NCBI ptt file) 0.63 53

Not shown: 47 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS06685 only