Conservation of cofitness between DDA3937_RS15930 and DDA3937_RS09560 in Dickeya dadantii 3937

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dadantii 3937 1.0 DDA3937_RS15930 DNA/RNA nuclease SfsA 1.0 DDA3937_RS09560 ATP-dependent Clp protease ATP-binding subunit ClpA 0.59 20
Dickeya dianthicola 67-19 0.97 HGI48_RS16045 DNA/RNA nuclease SfsA 0.99 HGI48_RS09575 ATP-dependent Clp protease ATP-binding subunit ClpA low > 71
Dickeya dianthicola ME23 0.97 DZA65_RS17130 DNA/RNA nuclease SfsA 0.99 DZA65_RS09885 ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Pectobacterium carotovorum WPP14 0.70 HER17_RS05585 DNA/RNA nuclease SfsA 0.94 HER17_RS12400 ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Rahnella sp. WP5 0.68 EX31_RS03245 DNA/RNA nuclease SfsA 0.93 EX31_RS18560 ATP-dependent Clp protease ATP-binding subunit ClpA low > 89
Serratia liquefaciens MT49 0.68 IAI46_21205 DNA/RNA nuclease SfsA 0.93 IAI46_08515 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Enterobacter sp. TBS_079 0.67 MPMX20_00832 Sugar fermentation stimulation protein A 0.91 MPMX20_01544 ATP-dependent Clp protease ATP-binding subunit ClpA low > 85
Escherichia coli ECRC102 0.66 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA 0.91 NIAGMN_03825 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03516 Sugar fermentation stimulation protein A 0.91 OHPLBJKB_02786 ATP-dependent Clp protease ATP-binding subunit ClpA low > 73
Escherichia coli ECOR27 0.66 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA 0.91 NOLOHH_22180 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.64 23
Escherichia coli BL21 0.66 ECD_00145 sugar fermentation stimulation protein A 0.91 ECD_00887 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity low > 61
Escherichia coli ECRC101 0.66 MCAODC_00855 sfsA DNA/RNA nuclease SfsA 0.91 MCAODC_25000 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Escherichia coli ECRC99 0.66 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA 0.91 KEDOAH_22125 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECRC100 0.66 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA 0.91 OKFHMN_05785 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Escherichia coli ECRC98 0.66 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA 0.91 JDDGAC_09420 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Escherichia coli BW25113 0.66 b0146 sfsA sugar fermentation stimulation protein A (NCBI) 0.91 b0882 clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) low > 76
Escherichia coli ECRC62 0.66 BNILDI_08985 sfsA DNA/RNA nuclease SfsA 0.91 BNILDI_20435 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Escherichia coli ECOR38 0.66 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA 0.91 HEPCGN_22900 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Klebsiella michiganensis M5al 0.66 BWI76_RS05020 sugar fermentation stimulation protein SfsA 0.90 BWI76_RS09615 ATP-dependent Clp protease ATP-binding subunit ClpA low > 92
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00820 DNA/RNA nuclease SfsA 0.91 ECOLIN_RS04695 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3735 sugar fermentation stimulation protein 0.91 EX28DRAFT_2050 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 76
Escherichia fergusonii Becca 0.65 EFB2_03898 Sugar fermentation stimulation protein A 0.91 EFB2_03179 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Pantoea sp. MT58 0.65 IAI47_15630 DNA/RNA nuclease SfsA 0.91 IAI47_12945 ATP-dependent Clp protease ATP-binding subunit ClpA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF86 Sugar/maltose fermentation stimulation protein homolog 0.91 GFF4901 ATP-dependent Clp protease ATP-binding subunit ClpA low > 78
Erwinia tracheiphila SCR3 0.64 LU632_RS20075 sfsA DNA/RNA nuclease SfsA 0.89 LU632_RS09705 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_03160 DNA/RNA nuclease SfsA 0.78 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA low > 62
Shewanella loihica PV-4 0.57 Shew_3128 sugar fermentation stimulation protein (RefSeq) 0.71 Shew_1566 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.54 SO0875 sfsA sugar fermentation stimulation protein (NCBI ptt file) 0.71 SO2626 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.54 Sama_0781 sugar fermentation stimulation protein A (RefSeq) 0.71 Sama_2056 ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) low > 62
Shewanella sp. ANA-3 0.54 Shewana3_3403 sugar fermentation stimulation protein A (RefSeq) 0.71 Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0055 sugar fermentation stimulation protein 0.65 B158DRAFT_1505 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 40
Marinobacter adhaerens HP15 0.47 HP15_333 sugar fermentation stimulation protein-like protein 0.67 HP15_2080 ATP-dependent Clp protease ATP-binding subunit ClpA low > 73
Pseudomonas putida KT2440 0.45 PP_4691 sugar fermentation stimulation protein A 0.65 PP_4008 ATP-dependent serine protease low > 96
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.65 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.65 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Dechlorosoma suillum PS 0.44 Dsui_0297 sugar fermentation stimulation protein 0.61 Dsui_0009 ATP-dependent Clp protease ATP-binding subunit clpA low > 51
Pseudomonas sp. RS175 0.44 PFR28_03712 Sugar fermentation stimulation protein A 0.66 PFR28_02613 ATP-dependent Clp protease ATP-binding subunit ClpA low > 88
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog 0.64 Pf6N2E2_292 ATP-dependent Clp protease ATP-binding subunit ClpA low > 103
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.65 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA low > 109
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_16105 XRE family transcriptional regulator 0.65 AO356_22150 ATP-dependent Clp protease ATP-binding subunit ClpA low > 104
Pseudomonas fluorescens SBW25 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.65 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA low > 109
Alteromonas macleodii MIT1002 0.43 MIT1002_03689 Sugar fermentation stimulation protein A 0.71 MIT1002_01834 ATP-dependent Clp protease ATP-binding subunit ClpA low > 70
Pseudomonas sp. S08-1 0.42 OH686_17290 sugar fermentation stimulation protein 0.65 OH686_00235 ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Pseudomonas simiae WCS417 0.42 PS417_23865 XRE family transcriptional regulator 0.66 PS417_16510 Clp protease ClpX low > 88
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog 0.65 Pf1N1B4_4055 ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Pseudomonas stutzeri RCH2 0.42 Psest_1005 sugar fermentation stimulation protein 0.65 Psest_2027 ATP-dependent Clp protease ATP-binding subunit clpA low > 67
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog 0.65 PfGW456L13_2646 ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_14430 XRE family transcriptional regulator 0.64 AO353_27675 ATP-dependent Clp protease ATP-binding subunit ClpA low > 101
Magnetospirillum magneticum AMB-1 0.41 AMB_RS08095 DNA/RNA nuclease SfsA 0.60 AMB_RS05705 ATP-dependent Clp protease ATP-binding subunit ClpA low > 64
Phaeobacter inhibens DSM 17395 0.37 PGA1_c29210 sugar fermentation stimulation protein A 0.57 PGA1_c25150 ATP-dependent Clp protease ATP-binding subunit low > 62
Dinoroseobacter shibae DFL-12 0.36 Dshi_0118 sugar fermentation stimulation protein (RefSeq) 0.59 Dshi_2939 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 64
Azospirillum brasilense Sp245 0.36 AZOBR_RS04410 XRE family transcriptional regulator 0.59 AZOBR_RS05175 ATP-dependent Clp protease ATP-binding protein low > 97
Agrobacterium fabrum C58 0.36 Atu1605 sugar fermentation stimulation protein 0.56 Atu1364 ATP-dependent Clp protease, ATP-binding subunit low > 89
Azospirillum sp. SherDot2 0.35 MPMX19_00188 Sugar fermentation stimulation protein A 0.59 MPMX19_00503 ATP-dependent Clp protease ATP-binding subunit ClpA low > 112
Rhodospirillum rubrum S1H 0.33 Rru_A0735 Sugar fermentation stimulation protein (NCBI) 0.60 Rru_A2109 ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) low > 58
Sinorhizobium meliloti 1021 0.32 SMc00297 sugar fermentation stimulation protein A 0.57 SMc02109 ATP-dependent Clp protease ATP-binding subunit protein — —
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_02757 sugar fermentation stimulation protein A 0.58 CCNA_02553 ATP-dependent clp protease ATP-binding subunit ClpA low > 67
Caulobacter crescentus NA1000 0.29 CCNA_02757 sugar fermentation stimulation protein A 0.58 CCNA_02553 ATP-dependent clp protease ATP-binding subunit ClpA low > 66
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU3224 sfsA sugar fermentation stimulation protein (TIGR) 0.51 DVU1602 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) low > 55

Not shown: 1 genomes with orthologs for DDA3937_RS15930 only; 30 genomes with orthologs for DDA3937_RS09560 only