Conservation of cofitness between CSW01_04820 and CSW01_10265 in Vibrio cholerae E7946 ATCC 55056

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04820 serine hydroxymethyltransferase 1.0 CSW01_10265 c-type cytochrome biogenesis protein CcmF 0.90 9
Shewanella sp. ANA-3 0.83 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) 0.50 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 73
Shewanella oneidensis MR-1 0.83 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) 0.49 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.82 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) 0.51 Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 62
Shewanella loihica PV-4 0.81 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) 0.51 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 60
Serratia liquefaciens MT49 0.81 IAI46_19395 serine hydroxymethyltransferase 0.65 IAI46_18085 heme lyase CcmF/NrfE family subunit — —
Pantoea sp. MT58 0.81 IAI47_04960 serine hydroxymethyltransferase 0.65 IAI47_06090 heme lyase CcmF/NrfE family subunit — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS14850 serine hydroxymethyltransferase 0.64 PagCFBP13505_RS00045 heme lyase CcmF/NrfE family subunit — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS05950 serine hydroxymethyltransferase 0.63 HER17_RS09055 heme lyase CcmF/NrfE family subunit — —
Rahnella sp. WP5 0.80 EX31_RS20585 serine hydroxymethyltransferase 0.67 EX31_RS19745 heme lyase CcmF/NrfE family subunit — —
Erwinia amylovora T8 0.79 OLJFJH_10340 Serine hydroxymethyltransferase 0.63 OLJFJH_11100 heme lyase NrfEFG subunit NrfE — —
Escherichia coli ECRC100 0.79 OKFHMN_21510 glyA serine hydroxymethyltransferase 0.60 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 79
Escherichia coli ECRC102 0.79 NIAGMN_19280 glyA serine hydroxymethyltransferase 0.60 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 80
Escherichia fergusonii Becca 0.79 EFB2_01345 Serine hydroxymethyltransferase 0.60 EFB2_01660 Cytochrome c-type biogenesis protein CcmF — —
Escherichia coli BL21 0.79 ECD_02443 serine hydroxymethyltransferase 0.60 ECD_02123 heme lyase, CcmF subunit low > 61
Escherichia coli ECOR38 0.79 HEPCGN_20655 glyA serine hydroxymethyltransferase 0.60 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 88
Escherichia coli ECOR27 0.79 NOLOHH_13185 glyA serine hydroxymethyltransferase 0.60 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_01156 Serine hydroxymethyltransferase 0.60 OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF low > 74
Escherichia coli ECRC98 0.79 JDDGAC_25175 glyA serine hydroxymethyltransferase 0.60 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC101 0.79 MCAODC_12040 glyA serine hydroxymethyltransferase 0.60 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli BW25113 0.79 b2551 glyA serine hydroxymethyltransferase (NCBI) 0.60 b2196 ccmF heme lyase, CcmF subunit (NCBI) — —
Escherichia coli ECRC99 0.79 KEDOAH_06710 glyA serine hydroxymethyltransferase 0.60 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli Nissle 1917 0.79 ECOLIN_RS14440 serine hydroxymethyltransferase 0.60 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC62 0.79 BNILDI_11985 glyA serine hydroxymethyltransferase 0.60 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.58 GFF4877 Cytochrome c heme lyase subunit CcmF — —
Klebsiella pneumoniae MKP103 0.79 KDGMDA_28355 Serine hydroxymethyltransferase 0.62 KDGMDA_23845 cytochrome c maturation protein CcmE low > 95
Pseudomonas sp. RS175 0.75 PFR28_03786 Serine hydroxymethyltransferase 0.52 PFR28_00870 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4270 serine hydroxymethyltransferase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas orientalis W4I3 0.75 QF045_RS26575 serine hydroxymethyltransferase 0.51 QF045_RS11430 heme lyase CcmF/NrfE family subunit — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4270 serine hydroxymethyltransferase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.51 Pf6N2E2_2555 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas sp. SVBP6 0.74 COO64_RS02995 glyA serine hydroxymethyltransferase 0.50 COO64_RS25715 heme lyase CcmF/NrfE family subunit — —
Pseudomonas putida KT2440 0.74 PP_0671 serine hydroxymethyltransferase 0.50 PP_4322 holocytochrome c synthetase — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_14020 serine hydroxymethyltransferase 0.51 AO353_18875 cytochrome C biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_15725 serine hydroxymethyltransferase 0.52 AO356_03635 cytochrome C biogenesis protein CcmF — —
Pseudomonas lactucae CFBP13502 0.74 GEMAOFIL_05008 Serine hydroxymethyltransferase 0.51 GEMAOFIL_01875 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. BP01 0.74 JOY50_RS24625 glyA serine hydroxymethyltransferase 0.49 JOY50_RS00480 heme lyase CcmF/NrfE family subunit — —
Pseudomonas sp. S08-1 0.74 OH686_16230 Serine hydroxymethyltransferase 0.51 OH686_02635 cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. DMC3 0.74 GFF3963 Serine hydroxymethyltransferase 0.51 GFF2490 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS26195 serine hydroxymethyltransferase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens SBW25 0.74 PFLU_RS26195 serine hydroxymethyltransferase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit — —
Pseudomonas simiae WCS417 0.74 PS417_24280 serine hydroxymethyltransferase 0.52 PS417_08715 cytochrome C biogenesis protein CcmF — —
Pseudomonas stutzeri RCH2 0.74 Psest_3404 Glycine/serine hydroxymethyltransferase 0.51 Psest_1759 c-type cytochrome biogenesis protein CcmF — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.53 PfGW456L13_4311 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2778 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.51 Pf1N1B4_3644 Cytochrome c heme lyase subunit CcmF — —
Marinobacter adhaerens HP15 0.74 HP15_489 glycine hydroxymethyltransferase 0.51 HP15_2281 cytochrome c assembly protein — —
Pseudomonas segetis P6 0.74 MPMX49_03979 Serine hydroxymethyltransferase 0.55 MPMX49_03107 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS23420 glyA;go_function=glycine serine hydroxymethyltransferase 0.49 DY961_RS05510 heme lyase CcmF/NrfE family subunit — —
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS55885 glyA;go_function=glycine serine hydroxymethyltransferase 0.49 DQ20_RS47280 heme lyase CcmF/NrfE family subunit — —
Pseudomonas aeruginosa PA14 0.73 IKLFDK_00500 Serine hydroxymethyltransferase 3 0.49 IKLFDK_07040 Cytochrome c-type biogenesis protein CcmF — —
Alteromonas macleodii MIT1002 0.73 MIT1002_02702 Serine hydroxymethyltransferase 0.56 MIT1002_00965 Cytochrome c-type biogenesis protein CcmF — —
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1908 Glycine/serine hydroxymethyltransferase 0.54 B158DRAFT_1328 c-type cytochrome biogenesis protein CcmF 0.62 13
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS04625 serine hydroxymethyltransferase 0.48 LRK54_RS16065 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter denitrificans MT42 0.72 LRK55_RS04400 serine hydroxymethyltransferase 0.48 LRK55_RS15815 heme lyase CcmF/NrfE family subunit low > 63
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS10715 serine hydroxymethyltransferase 0.48 ABZR86_RS06445 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter sp000427505 FW510-R12 0.72 LRK53_RS05390 serine hydroxymethyltransferase 0.45 LRK53_RS12730 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter sp. FW510-T8 0.72 OKGIIK_11440 glyA serine hydroxymethyltransferase 0.46 OKGIIK_08585 ccmF c-type cytochrome biogenesis protein CcmF — —
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.4398.1 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.47 Xcc-8004.3190.1 Cytochrome c heme lyase subunit CcmF low > 74
Lysobacter sp. OAE881 0.71 ABIE51_RS04620 serine hydroxymethyltransferase 0.48 ABIE51_RS08700 heme lyase CcmF/NrfE family subunit low > 62
Dechlorosoma suillum PS 0.64 Dsui_1265 glycine/serine hydroxymethyltransferase 0.53 Dsui_1172 c-type cytochrome biogenesis protein CcmF — —
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_3097 glyA serine hydroxymethyltransferase (RefSeq) 0.21 DvMF_3132 cytochrome c assembly protein (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.56 DVU1203 glyA serine hydroxymethyltransferase (TIGR) 0.21 DVU1050 ccmF cytochrome c-type biogenesis protein CcmF (TIGR) — —

Not shown: 38 genomes with orthologs for CSW01_04820 only; 17 genomes with orthologs for CSW01_10265 only