Conservation of cofitness between CSW01_01175 and CSW01_09970 in Vibrio cholerae E7946 ATCC 55056

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01175 formamidopyrimidine-DNA glycosylase 1.0 CSW01_09970 peptide-methionine (R)-S-oxide reductase 0.74 1
Klebsiella pneumoniae MKP103 0.61 KDGMDA_08015 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.52 KDGMDA_19185 Peptide methionine sulfoxide reductase MsrB low > 94
Klebsiella pneumoniae MRSN742743 0.61 GJGHJB_00138 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.52 GJGHJB_03005 msrB Peptide methionine sulfoxide reductase MsrB low > 83
Enterobacter sp. TBS_079 0.61 MPMX20_00100 Formamidopyrimidine-DNA glycosylase 0.54 MPMX20_01845 Peptide methionine sulfoxide reductase MsrB low > 85
Escherichia fergusonii Becca 0.60 EFB2_00178 Formamidopyrimidine-DNA glycosylase 0.52 EFB2_02216 Peptide methionine sulfoxide reductase MsrB low > 86
Escherichia coli ECRC99 0.60 KEDOAH_12515 Formamidopyrimidine-DNA glycosylase 0.52 KEDOAH_01375 msrB Peptide methionine sulfoxide reductase MsrB — —
Escherichia coli Nissle 1917 0.60 ECOLIN_RS20715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.52 ECOLIN_RS09915 peptide-methionine (R)-S-oxide reductase MsrB — —
Escherichia coli ECRC101 0.60 MCAODC_06145 Formamidopyrimidine-DNA glycosylase 0.52 MCAODC_18675 msrB Peptide methionine sulfoxide reductase MsrB low > 87
Escherichia coli ECRC98 0.60 JDDGAC_19260 Formamidopyrimidine-DNA glycosylase 0.52 JDDGAC_01310 msrB Peptide methionine sulfoxide reductase MsrB low > 87
Escherichia coli ECRC100 0.60 OKFHMN_15635 Formamidopyrimidine-DNA glycosylase 0.52 OKFHMN_26735 msrB Peptide methionine sulfoxide reductase MsrB low > 79
Escherichia coli ECRC102 0.60 NIAGMN_13395 Formamidopyrimidine-DNA glycosylase 0.52 NIAGMN_01330 msrB Peptide methionine sulfoxide reductase MsrB — —
Escherichia coli BW25113 0.60 b3635 mutM formamidopyrimidine-DNA glycosylase (NCBI) 0.52 b1778 yeaA methionine sulfoxide reductase B (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00067 Formamidopyrimidine-DNA glycosylase 0.52 OHPLBJKB_01954 Peptide methionine sulfoxide reductase MsrB low > 74
Escherichia coli BL21 0.60 ECD_03492 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 0.52 ECD_01747 methionine sulfoxide reductase B low > 61
Escherichia coli ECRC62 0.60 BNILDI_04000 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.52 BNILDI_16050 msrB Peptide methionine sulfoxide reductase MsrB low > 75
Escherichia coli ECOR38 0.60 HEPCGN_14460 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.52 HEPCGN_05125 msrB Peptide methionine sulfoxide reductase MsrB low > 88
Escherichia coli ECOR27 0.60 NOLOHH_07515 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.52 NOLOHH_17265 msrB Peptide methionine sulfoxide reductase MsrB low > 75
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3885 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.54 EX28DRAFT_1772 methionine-R-sulfoxide reductase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF374 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.54 GFF3479 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 78
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.49 Psyr_3614 Protein of unknown function DUF25 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.49 Psyr_3614 Protein of unknown function DUF25 low > 86
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2309 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.51 Pf1N1B4_260 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 87
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_979 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.50 PfGW456L13_2253 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 87
Pseudomonas protegens RBAN4 0.53 FABNJH_29590 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.49 FABNJH_21925 msrB Peptide methionine sulfoxide reductase MsrB — —
Pseudomonas aeruginosa PUPa3 0.53 NPBIFN_00368 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.53 NPBIFN_02187 msrB Peptide methionine sulfoxide reductase MsrB low > 101
Pseudomonas aeruginosa PA14 0.53 IKLFDK_23650 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.53 IKLFDK_14360 Peptide methionine sulfoxide reductase MsrB 0.24 37
Pseudomonas sp. DMC3 0.53 GFF239 Formamidopyrimidine-DNA glycosylase 0.50 GFF4595 Peptide methionine sulfoxide reductase MsrB low > 89
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS13335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.47 ABZR86_RS11250 peptide-methionine (R)-S-oxide reductase MsrB low > 74
Pseudomonas aeruginosa MRSN321 0.53 PFGADD_00364 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.53 PFGADD_02147 msrB Peptide methionine sulfoxide reductase MsrB 0.16 95
Pseudomonas sp. SVBP6 0.53 COO64_RS12835 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.49 COO64_RS05975 msrB peptide-methionine (R)-S-oxide reductase MsrB low > 91
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_08320 5-hydroxymethyluracil DNA glycosylase 0.50 AO353_19155 peptide methionine sulfoxide reductase low > 101
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.5281.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.41 Xcc-8004.4624.1 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 74
Pseudomonas sp. RS175 0.53 PFR28_04272 Formamidopyrimidine-DNA glycosylase 0.49 PFR28_00985 Peptide methionine sulfoxide reductase MsrB low > 88
Pseudomonas putida KT2440 0.53 PP_5125 Formamidopyrimidine-DNA glycosylase 0.48 PP_1873 Peptide methionine sulfoxide reductase MsrB low > 96
Pseudomonas sp. BP01 0.52 JOY50_RS20760 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.49 JOY50_RS16980 msrB peptide-methionine (R)-S-oxide reductase MsrB low > 84
Pseudomonas stutzeri RCH2 0.52 Psest_0239 formamidopyrimidine-DNA glycosylase (fpg) 0.52 Psest_1773 methionine-R-sulfoxide reductase low > 67
Pseudomonas orientalis W4I3 0.52 QF045_RS01270 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.49 QF045_RS11290 peptide-methionine (R)-S-oxide reductase MsrB low > 93
Pseudomonas simiae WCS417 0.51 PS417_26870 5-hydroxymethyluracil DNA glycosylase 0.49 PS417_08565 peptide methionine sulfoxide reductase low > 88
Pseudomonas fluorescens SBW25 0.51 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.50 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.50 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB low > 109
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_05511 Formamidopyrimidine-DNA glycosylase 0.49 GEMAOFIL_01845 Peptide methionine sulfoxide reductase MsrB low > 96
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_4569 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.50 Pf6N2E2_2445 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 103
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_13270 5-hydroxymethyluracil DNA glycosylase 0.50 AO356_03085 peptide methionine sulfoxide reductase low > 104
Pseudomonas sp. S08-1 0.49 OH686_14125 DNA-formamidopyrimidine glycosylase 0.49 OH686_22580 Peptide-methionine (R)-S-oxide reductase MsrB low > 80
Acinetobacter radioresistens SK82 0.47 MPMX26_02486 Formamidopyrimidine-DNA glycosylase 0.52 MPMX26_01870 Peptide methionine sulfoxide reductase MsrB low > 36
Acinetobacter baumannii LAC-4 0.45 RR41_RS03325 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.47 RR41_RS11540 peptide-methionine (R)-S-oxide reductase MsrB — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000711 formamidopyrimidine-DNA glycosylase 0.46 ABIE53_002148 peptide-methionine (R)-S-oxide reductase low > 113
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS19545 formamidopyrimidine-DNA glycosylase 0.44 HSERO_RS11215 methionine sulfoxide reductase B low > 78
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_01934 DNA-(apurinic or apyrimidinic site) lyase 0.46 H281DRAFT_00913 peptide-methionine (R)-S-oxide reductase low > 103
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS02870 formamidopyrimidine-DNA glycosylase 0.46 BPHYT_RS09545 peptide methionine sulfoxide reductase low > 109
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS02040 formamidopyrimidine-DNA glycosylase 0.45 RR42_RS11165 methionine sulfoxide reductase B low > 128
Ralstonia solanacearum PSI07 0.40 RPSI07_RS22175 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.47 RPSI07_RS16290 peptide-methionine (R)-S-oxide reductase low > 81
Ralstonia solanacearum UW163 0.40 UW163_RS02455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.47 UW163_RS14495 peptide-methionine (R)-S-oxide reductase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS11125 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.47 RALBFv3_RS01185 peptide-methionine (R)-S-oxide reductase low > 76
Ralstonia solanacearum GMI1000 0.40 RS_RS01975 formamidopyrimidine-DNA glycosylase 0.47 RS_RS08825 peptide-methionine (R)-S-oxide reductase low > 80
Castellaniella sp019104865 MT123 0.40 ABCV34_RS09265 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.46 ABCV34_RS08520 peptide-methionine (R)-S-oxide reductase MsrB low > 48
Variovorax sp. SCN45 0.38 GFF2353 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.44 GFF1329 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) low > 127
Variovorax sp. OAS795 0.35 ABID97_RS23725 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.43 ABID97_RS15695 peptide-methionine (R)-S-oxide reductase MsrB low > 91
Rhodopseudomonas palustris CGA009 0.35 TX73_000435 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.44 TX73_021075 peptide-methionine (R)-S-oxide reductase MsrB low > 86
Sphingobium sp. HT1-2 0.35 GFF386 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.47 GFF4143 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) low > 95
Magnetospirillum magneticum AMB-1 0.34 AMB_RS03255 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.45 AMB_RS20830 peptide-methionine (R)-S-oxide reductase low > 64
Caulobacter crescentus NA1000 0.34 CCNA_03822 formamidopyrimidine-DNA glycosylase 0.42 CCNA_02265 peptide methionine sulfoxide reductase msrB low > 66
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_03822 formamidopyrimidine-DNA glycosylase 0.42 CCNA_02265 peptide methionine sulfoxide reductase msrB low > 67
Sinorhizobium meliloti 1021 0.32 SMc01154 formamidopyrimidine-DNA glycosylase 0.49 SMc00117 hypothetical protein low > 103
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_1323 fpg DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.49 Synpcc7942_2190 msrB Methionine sulfoxide reductase B low > 38

Not shown: 41 genomes with orthologs for CSW01_01175 only; 2 genomes with orthologs for CSW01_09970 only