Conservation of cofitness between CSW01_07840 and CSW01_09655 in Vibrio cholerae E7946 ATCC 55056

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07840 LysR family transcriptional regulator 1.0 CSW01_09655 SELO family protein 0.59 10
Pantoea sp. MT58 0.27 IAI47_19555 LysR family transcriptional regulator 0.43 IAI47_10920 YdiU family protein low > 76
Sinorhizobium meliloti 1021 0.27 SMa1956 hypothetical protein 0.31 SMc00453 hypothetical protein low > 103
Pseudomonas aeruginosa PA14 0.27 IKLFDK_17030 LysR family transcriptional regulator 0.42 IKLFDK_28420 YdiU family protein low > 100
Pantoea agglomerans CFBP13505 P0401 0.26 PagCFBP13505_RS07820 LysR family transcriptional regulator 0.43 PagCFBP13505_RS17670 YdiU family protein low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF1968 FIG000557: hypothetical protein co-occurring with RecR 0.38 GFF4580 Selenoprotein O and cysteine-containing homologs low > 90
Klebsiella pneumoniae MKP103 0.26 KDGMDA_11960 LysR family transcriptional regulator 0.44 KDGMDA_24305 protein adenylyltransferase SelO low > 95
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS33715 LysR family transcriptional regulator 0.39 QEN71_RS21900 YdiU family protein low > 153
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS24025 LysR family transcriptional regulator 0.42 HSERO_RS11220 hypothetical protein — —
Serratia liquefaciens MT49 0.25 IAI46_24225 LysR family transcriptional regulator 0.44 IAI46_11065 YdiU family protein low > 86
Klebsiella michiganensis M5al 0.25 BWI76_RS03630 LysR family transcriptional regulator 0.45 BWI76_RS17085 hypothetical protein low > 92
Pseudomonas simiae WCS417 0.24 PS417_06950 LysR family transcriptional regulator 0.43 PS417_02140 hypothetical protein low > 88
Variovorax sp. SCN45 0.24 GFF3493 Transcriptional regulator, LysR family 0.39 GFF1330 UPF0061 protein YdiU low > 127
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_5914 Transcriptional regulator, LysR family 0.43 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs low > 87
Acidovorax sp. GW101-3H11 0.24 Ac3H11_136 Transcriptional regulator, LysR family 0.41 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs low > 79
Pseudomonas fluorescens SBW25 0.24 PFLU_RS07005 LysR family transcriptional regulator 0.42 PFLU_RS02195 YdiU family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS07005 LysR family transcriptional regulator 0.42 PFLU_RS02195 YdiU family protein low > 109
Enterobacter sp. TBS_079 0.24 MPMX20_02266 PCP degradation transcriptional activation protein 0.44 MPMX20_01907 Protein adenylyltransferase SelO low > 85
Rhizobium sp. OAE497 0.24 ABIE40_RS22095 LysR substrate-binding domain-containing protein 0.33 ABIE40_RS04755 protein adenylyltransferase SelO low > 107
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS33920 LysR family transcriptional regulator 0.38 RR42_RS11160 hypothetical protein low > 128
Paraburkholderia graminis OAS925 0.24 ABIE53_005185 DNA-binding transcriptional LysR family regulator 0.39 ABIE53_002149 uncharacterized protein YdiU (UPF0061 family) low > 113
Ralstonia solanacearum PSI07 0.24 RPSI07_RS18815 LysR family transcriptional regulator 0.40 RPSI07_RS16295 YdiU family protein low > 81
Ralstonia solanacearum GMI1000 0.24 RS_RS05425 LysR family transcriptional regulator 0.40 RS_RS08830 YdiU family protein low > 80
Variovorax sp. OAS795 0.24 ABID97_RS03360 LysR family transcriptional regulator 0.40 ABID97_RS15700 protein adenylyltransferase SelO low > 91
Xanthobacter sp. DMC5 0.24 GFF2011 PCP degradation transcriptional activation protein 0.33 GFF2077 Protein adenylyltransferase SelO — —
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_22265 LysR family transcriptional regulator 0.43 AO353_12770 hypothetical protein low > 101
Pectobacterium carotovorum WPP14 0.23 HER17_RS02935 LysR family transcriptional regulator 0.44 HER17_RS08850 YdiU family protein low > 75
Paraburkholderia bryophila 376MFSha3.1 0.23 H281DRAFT_01598 transcriptional regulator, LysR family 0.39 H281DRAFT_00914 Uncharacterized conserved protein YdiU, UPF0061 family low > 103
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS21410 LysR family transcriptional regulator 0.39 BPHYT_RS09550 hypothetical protein low > 109
Ralstonia solanacearum UW163 0.23 UW163_RS12115 LysR family transcriptional regulator 0.41 UW163_RS14490 YdiU family protein — —
Ralstonia solanacearum IBSBF1503 0.23 RALBFv3_RS14645 LysR family transcriptional regulator 0.41 RALBFv3_RS01180 YdiU family protein low > 76
Pseudomonas sp. DMC3 0.23 GFF936 Nodulation protein D 2 0.41 GFF3135 Protein adenylyltransferase SelO low > 89
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_01177 PCP degradation transcriptional activation protein 0.43 GEMAOFIL_00665 Protein adenylyltransferase SelO low > 93
Pseudomonas stutzeri RCH2 0.23 Psest_2748 Transcriptional regulator 0.42 Psest_0396 Uncharacterized conserved protein low > 67
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_3864 Transcriptional regulator, LysR family 0.43 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs low > 87
Rhodopseudomonas palustris CGA009 0.23 TX73_009285 LysR family transcriptional regulator 0.33 TX73_015750 YdiU family protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_3796 transcriptional regulator, LysR family 0.42 Psyr_0494 Protein of unknown function UPF0061 low > 86
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS15035 LysR substrate-binding domain-containing protein 0.40 ABZR87_RS12630 protein adenylyltransferase SelO low > 80
Pseudomonas sp. RS175 0.22 PFR28_02648 Nodulation protein D 2 0.45 PFR28_05043 Protein adenylyltransferase SelO low > 88
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_3796 transcriptional regulator, LysR family 0.42 Psyr_0494 Protein of unknown function UPF0061 low > 86
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_254 Transcriptional regulator, LysR family 0.42 Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs low > 103
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_21965 LysR family transcriptional regulator 0.43 AO356_09050 hypothetical protein low > 104
Bosea sp. OAE506 0.22 ABIE41_RS06780 LysR family transcriptional regulator 0.30 ABIE41_RS01530 protein adenylyltransferase SelO low > 77
Pseudomonas sp. BP01 0.22 JOY50_RS07465 LysR family transcriptional regulator 0.44 JOY50_RS09370 selO protein adenylyltransferase SelO 0.29 73
Acinetobacter radioresistens SK82 0.22 MPMX26_02320 HTH-type transcriptional regulator SyrM 1 0.34 MPMX26_02624 Protein adenylyltransferase SelO low > 36
Rahnella sp. WP5 0.22 EX31_RS20430 LysR family transcriptional regulator 0.43 EX31_RS13970 YdiU family protein low > 89
Pseudomonas putida KT2440 0.21 PP_3608 Transcriptional regulator, LysR family 0.44 PP_5068 conserved protein of unknown function, UPF0061 family 0.14 12
Acinetobacter baumannii LAC-4 0.21 RR41_RS08960 LysR family transcriptional regulator 0.33 RR41_RS03080 YdiU family protein low > 55
Pseudomonas sp. S08-1 0.21 OH686_18490 Transcriptional regulator, LysR family 0.43 OH686_09805 UPF0061 protein YdiU low > 80
Castellaniella sp019104865 MT123 0.21 ABCV34_RS11570 LysR family transcriptional regulator 0.32 ABCV34_RS04315 YdiU family protein low > 48
Dickeya dadantii 3937 0.19 DDA3937_RS21355 LysR family transcriptional regulator 0.44 DDA3937_RS12935 YdiU family protein low > 74
Dickeya dianthicola ME23 0.18 DZA65_RS10285 LysR family transcriptional regulator 0.44 DZA65_RS13470 YdiU family protein low > 75
Dickeya dianthicola 67-19 0.18 HGI48_RS09950 LysR family transcriptional regulator 0.44 HGI48_RS13010 YdiU family protein low > 71
Erwinia amylovora T8 0.14 OLJFJH_04645 LysR family transcriptional regulator 0.44 OLJFJH_14650 YdiU family protein low > 58

Not shown: 6 genomes with orthologs for CSW01_07840 only; 37 genomes with orthologs for CSW01_09655 only