Conservation of cofitness between CSW01_03175 and CSW01_09245 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03175 penicillin-binding protein 1B 1.0 CSW01_09245 Holliday junction branch migration protein RuvA 0.78 4
Serratia liquefaciens MT49 0.49 IAI46_21190 bifunctional glycosyl transferase/transpeptidase 0.60 IAI46_14625 Holliday junction branch migration protein RuvA — —
Pectobacterium carotovorum WPP14 0.48 HER17_RS05600 bifunctional glycosyl transferase/transpeptidase 0.61 HER17_RS11845 Holliday junction branch migration protein RuvA — —
Dickeya dadantii 3937 0.48 DDA3937_RS15915 bifunctional glycosyl transferase/transpeptidase 0.61 DDA3937_RS10080 Holliday junction branch migration protein RuvA — —
Dickeya dianthicola ME23 0.48 DZA65_RS17115 bifunctional glycosyl transferase/transpeptidase 0.61 DZA65_RS10525 Holliday junction branch migration protein RuvA — —
Dickeya dianthicola 67-19 0.48 HGI48_RS16030 bifunctional glycosyl transferase/transpeptidase 0.61 HGI48_RS10110 Holliday junction branch migration protein RuvA — —
Pantoea agglomerans CFBP13505 P0401 0.46 PagCFBP13505_RS13390 bifunctional glycosyl transferase/transpeptidase 0.59 PagCFBP13505_RS02325 Holliday junction branch migration protein RuvA — —
Erwinia tracheiphila SCR3 0.46 LU632_RS20060 mrcB bifunctional glycosyl transferase/transpeptidase 0.60 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA — —
Erwinia tracheiphila HP pepo 2.2 0.46 IJEDHG_15080 Penicillin-binding protein 1B 0.61 IJEDHG_22135 ruvA Holliday junction branch migration protein RuvA — —
Pantoea sp. MT58 0.46 IAI47_15615 bifunctional glycosyl transferase/transpeptidase 0.63 IAI47_08445 Holliday junction branch migration protein RuvA low > 76
Klebsiella pneumoniae MKP103 0.45 KDGMDA_13365 bifunctional glycosyl transferase/transpeptidase 0.66 KDGMDA_25415 Holliday junction branch migration protein RuvA low > 95
Enterobacter sp. TBS_079 0.45 MPMX20_00835 Penicillin-binding protein 1B 0.66 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA low > 85
Enterobacter asburiae PDN3 0.45 EX28DRAFT_3738 penicillin-binding protein 1B 0.66 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA — —
Escherichia coli BL21 0.45 ECD_00148 fused glycosyl transferase and transpeptidase 0.67 ECD_01832 component of RuvABC resolvasome, regulatory subunit — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF83 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.65 GFF1640 Holliday junction DNA helicase RuvA — —
Erwinia amylovora T8 0.45 OLJFJH_00745 bifunctional glycosyl transferase/transpeptidase 0.62 OLJFJH_12855 Holliday junction branch migration protein RuvA — —
Escherichia coli BW25113 0.45 b0149 mrcB penicillin-binding protein 1b (NCBI) 0.67 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.26 47
Escherichia coli Nissle 1917 0.45 ECOLIN_RS00835 bifunctional glycosyl transferase/transpeptidase 0.67 ECOLIN_RS10365 Holliday junction branch migration protein RuvA — —
Escherichia coli ECOR38 0.45 HEPCGN_08275 mrcB bifunctional glycosyl transferase/transpeptidase 0.66 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA — —
Rahnella sp. WP5 0.45 EX31_RS03230 bifunctional glycosyl transferase/transpeptidase 0.66 EX31_RS11675 Holliday junction branch migration protein RuvA low > 89
Klebsiella michiganensis M5al 0.45 BWI76_RS05120 bifunctional glycosyl transferase/transpeptidase 0.65 BWI76_RS18150 Holliday junction branch migration protein RuvA — —
Escherichia coli ECOR27 0.45 NOLOHH_02670 mrcB bifunctional glycosyl transferase/transpeptidase 0.66 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC101 0.45 MCAODC_00840 mrcB bifunctional glycosyl transferase/transpeptidase 0.66 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC62 0.45 BNILDI_09000 mrcB bifunctional glycosyl transferase/transpeptidase 0.67 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC100 0.45 OKFHMN_10325 mrcB bifunctional glycosyl transferase/transpeptidase 0.66 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC102 0.45 NIAGMN_08175 mrcB bifunctional glycosyl transferase/transpeptidase 0.66 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC98 0.45 JDDGAC_13920 mrcB bifunctional glycosyl transferase/transpeptidase 0.66 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA — —
Escherichia fergusonii Becca 0.45 EFB2_03895 Penicillin-binding protein 1B 0.67 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA — —
Escherichia coli ECRC99 0.45 KEDOAH_17830 mrcB bifunctional glycosyl transferase/transpeptidase 0.66 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_03513 Penicillin-binding protein 1B 0.67 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA — —
Shewanella amazonensis SB2B 0.43 Sama_2971 peptidoglycan glycosyltransferase (RefSeq) 0.60 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) — —
Shewanella loihica PV-4 0.43 Shew_3123 penicillin-binding protein 1B (RefSeq) 0.64 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) — —
Shewanella oneidensis MR-1 0.43 SO0633 mrcB penicillin-binding protein 1B (NCBI ptt file) 0.63 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.36 23
Shewanella sp. ANA-3 0.43 Shewana3_0623 penicillin-binding protein 1B (RefSeq) 0.62 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.41 MIT1002_00409 Murein polymerase 0.63 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA — —
Pseudomonas aeruginosa PA14 0.39 IKLFDK_30125 penicillin-binding protein 1B 0.56 IKLFDK_04370 Holliday junction branch migration protein RuvA — —
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_04916 Penicillin-binding protein 1B 0.52 GEMAOFIL_04642 Holliday junction ATP-dependent DNA helicase RuvA low > 93
Pseudomonas sp. DMC3 0.38 GFF4046 Penicillin-binding protein 1B 0.55 GFF5185 Holliday junction ATP-dependent DNA helicase RuvA low > 89
Pseudomonas simiae WCS417 0.38 PS417_23825 penicillin-binding protein 0.52 PS417_22450 ATP-dependent DNA helicase RuvA low > 88
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_14475 penicillin-binding protein 1B 0.55 AO353_03585 ATP-dependent DNA helicase RuvA low > 101
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2874 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.55 Pf1N1B4_638 Holliday junction DNA helicase RuvA — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25665 penicillin-binding protein 1B 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.25 46
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25665 penicillin-binding protein 1B 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA low > 109
Pseudomonas sp. RS175 0.38 PFR28_03703 Penicillin-binding protein 1B 0.55 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA low > 88
Pseudomonas sp. SVBP6 0.38 COO64_RS15020 mrcB penicillin-binding protein 1B 0.56 COO64_RS20095 ruvA Holliday junction branch migration protein RuvA low > 93
Pseudomonas sp. BP01 0.38 JOY50_RS27745 mrcB penicillin-binding protein 1B 0.57 JOY50_RS01820 ruvA Holliday junction branch migration protein RuvA low > 84
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_16150 penicillin-binding protein 1B 0.55 AO356_18020 ATP-dependent DNA helicase RuvA low > 104
Pseudomonas stutzeri RCH2 0.38 Psest_1032 penicillin-binding protein 1B 0.56 Psest_1496 Holliday junction DNA helicase, RuvA subunit — —
Pseudomonas putida KT2440 0.38 PP_4683 transglycosylase/transpeptidase 0.57 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 0.17 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0842 Peptidoglycan glycosyltransferase 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA low > 86
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0842 Peptidoglycan glycosyltransferase 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA — —
Pseudomonas segetis P6 0.37 MPMX49_01270 Penicillin-binding protein 1B 0.57 MPMX49_01684 Holliday junction ATP-dependent DNA helicase RuvA low > 75
Pseudomonas sp. S08-1 0.37 OH686_08150 penicillin-binding protein 1B 0.55 OH686_19130 Holliday junction DNA helicase RuvA — —
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_1535 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.54 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.38 9
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_5171 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.55 Pf6N2E2_5536 Holliday junction DNA helicase RuvA low > 103
Marinobacter adhaerens HP15 0.36 HP15_338 penicillin-binding protein 1B 0.52 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA — —
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_0038 penicillin-binding protein 1B 0.53 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA low > 40
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS12740 penicillin-binding protein 1B 0.48 LRK54_RS04910 Holliday junction branch migration protein RuvA — —
Rhodanobacter denitrificans MT42 0.32 LRK55_RS12445 penicillin-binding protein 1B 0.48 LRK55_RS04690 Holliday junction branch migration protein RuvA — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_02185 Penicillin-binding protein 1B 0.45 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA low > 53
Acinetobacter baumannii LAC-4 0.31 RR41_RS06175 penicillin-binding protein 1B 0.40 RR41_RS04690 Holliday junction branch migration protein RuvA — —
Acinetobacter radioresistens SK82 0.31 MPMX26_02029 Penicillin-binding protein 1B 0.42 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA low > 36
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS19740 penicillin-binding protein 1B 0.46 ABZR86_RS10840 Holliday junction branch migration protein RuvA low > 74
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS15845 penicillin-binding protein 1B 0.46 LRK53_RS05120 Holliday junction branch migration protein RuvA — —
Lysobacter sp. OAE881 0.28 ABIE51_RS05185 penicillin-binding protein 1B 0.44 ABIE51_RS05045 Holliday junction branch migration protein RuvA low > 62
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.1494.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA low > 74

Not shown: 0 genomes with orthologs for CSW01_03175 only; 52 genomes with orthologs for CSW01_09245 only