| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12875 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 1.0 | CSW01_07515 | | tail-specific protease | 0.48 | 11 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_03802 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.57 | OHPLBJKB_01901 | | Tail-specific protease | low | > 74 |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_11940 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | OKFHMN_26465 | prc | carboxy terminal-processing peptidase | low | > 79 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_02445 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | MCAODC_18940 | prc | carboxy terminal-processing peptidase | low | > 88 |
| Escherichia fergusonii Becca | 0.71 | EFB2_04300 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.57 | EFB2_02171 | | Tail-specific protease | low | > 86 |
| Escherichia coli ECOR38 | 0.71 | HEPCGN_10140 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | HEPCGN_04865 | prc | carboxy terminal-processing peptidase | low | > 88 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_15580 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | JDDGAC_01040 | prc | carboxy terminal-processing peptidase | low | > 87 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_16215 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | KEDOAH_01640 | prc | carboxy terminal-processing peptidase | — | — |
| Escherichia coli BL21 | 0.71 | ECD_04101 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | ECD_01801 | | carboxy-terminal protease for penicillin-binding protein 3 | low | > 61 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_04200 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | NOLOHH_16975 | prc | carboxy terminal-processing peptidase | 0.79 | 72 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_07315 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | BNILDI_15770 | prc | carboxy terminal-processing peptidase | low | > 75 |
| Escherichia coli BW25113 | 0.71 | b4233 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | 0.57 | b1830 | prc | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.71 | KDGMDA_11310 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.57 | KDGMDA_25245 | | carboxy terminal-processing peptidase | 0.59 | 33 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_09790 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | NIAGMN_01595 | prc | carboxy terminal-processing peptidase | low | > 80 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS24560 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | ECOLIN_RS10190 | | carboxy terminal-processing peptidase | — | — |
| Serratia liquefaciens MT49 | 0.70 | IAI46_01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | IAI46_10800 | | carboxy terminal-processing peptidase | low | > 86 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS02820 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | BWI76_RS17975 | | tail-specific protease | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF881 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.57 | GFF2845 | | Tail-specific protease precursor (EC 3.4.21.102) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_00515 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.55 | MPMX20_02737 | | Tail-specific protease | low | > 85 |
| Enterobacter asburiae PDN3 | 0.69 | EX28DRAFT_3420 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.55 | EX28DRAFT_0726 | | C-terminal peptidase (prc) | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.69 | PagCFBP13505_RS11350 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.56 | PagCFBP13505_RS02535 | | carboxy terminal-processing peptidase | low | > 74 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS18580 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.56 | DDA3937_RS11965 | | carboxy terminal-processing peptidase | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS02615 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | HER17_RS11690 | | carboxy terminal-processing peptidase | low | > 75 |
| Pantoea sp. MT58 | 0.69 | IAI47_02755 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.56 | IAI47_08705 | | carboxy terminal-processing peptidase | low | > 76 |
| Erwinia amylovora T8 | 0.69 | OLJFJH_02365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.56 | OLJFJH_13010 | | carboxy terminal-processing peptidase | — | — |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS18515 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.56 | HGI48_RS12055 | | carboxy terminal-processing peptidase | low | > 71 |
| Dickeya dianthicola ME23 | 0.68 | DZA65_RS19650 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.56 | DZA65_RS12505 | | carboxy terminal-processing peptidase | low | > 75 |
| Erwinia tracheiphila HP pepo 2.2 | 0.67 | IJEDHG_06780 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.56 | IJEDHG_22325 | prc | carboxy terminal-processing peptidase | — | — |
| Erwinia tracheiphila SCR3 | 0.67 | LU632_RS02135 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.56 | LU632_RS13250 | prc | carboxy terminal-processing peptidase | — | — |
| Shewanella amazonensis SB2B | 0.67 | Sama_0769 | | UDP-N-acetylmuramate (RefSeq) | 0.59 | Sama_1585 | | carboxy-terminal protease (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.67 | EX31_RS08665 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.55 | EX31_RS24880 | | carboxy terminal-processing peptidase | low | > 89 |
| Shewanella loihica PV-4 | 0.65 | Shew_3144 | | UDP-N-acetylmuramate (RefSeq) | 0.60 | Shew_1802 | | carboxy-terminal protease (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_00168 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.52 | MIT1002_02025 | | Tail-specific protease precursor | low | > 70 |
| Shewanella oneidensis MR-1 | 0.64 | SO3805 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) | 0.58 | SO2601 | | carboxyl-terminal protease (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_0791 | | UDP-N-acetylmuramate (RefSeq) | 0.58 | Shewana3_1778 | | carboxy-terminal protease (RefSeq) | low | > 73 |
| Pseudomonas sp. BP01 | 0.64 | JOY50_RS23075 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | JOY50_RS27880 | | carboxy terminal-processing peptidase | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.63 | GEMAOFIL_05114 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.38 | GEMAOFIL_02031 | | Tail-specific protease | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.63 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | PFLU_RS09980 | | peptidase S41 | 0.77 | 41 |
| Pseudomonas simiae WCS417 | 0.63 | PS417_24800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | PS417_09325 | | peptidase S41 | low | > 88 |
| Pseudomonas putida KT2440 | 0.63 | PP_0547 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | PP_1719 | | Tail-specific protease prc | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.63 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | PFLU_RS09980 | | peptidase S41 | 0.40 | 27 |
| Pseudomonas segetis P6 | 0.63 | MPMX49_01032 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.40 | MPMX49_01745 | | Tail-specific protease | low | > 75 |
| Pseudomonas syringae pv. syringae B728a | 0.63 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | Psyr_1599 | | C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.63 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | Psyr_1599 | | C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.63 | COO64_RS15685 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | COO64_RS06980 | | carboxy terminal-processing peptidase | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.62 | IKLFDK_20730 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.40 | IKLFDK_16655 | | tail-specific protease | low | > 100 |
| Pseudomonas sp. RS175 | 0.62 | PFR28_03883 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.39 | PFR28_03169 | | Tail-specific protease | 0.35 | 36 |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_06550 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | AO353_02440 | | peptidase S41 | 0.42 | 7 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_0673 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.41 | Psest_2951 | | C-terminal peptidase (prc) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_1344 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.39 | PfGW456L13_4207 | | Periplasmic protease | 0.39 | 13 |
| Pseudomonas fluorescens FW300-N2E2 | 0.62 | Pf6N2E2_4982 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.38 | Pf6N2E2_5780 | | Periplasmic protease | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2676 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.39 | Pf1N1B4_3741 | | Periplasmic protease | — | — |
| Pseudomonas sp. S08-1 | 0.62 | OH686_09400 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.40 | OH686_19710 | | Tail-specific protease precursor | 0.85 | 2 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_15235 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | AO356_19335 | | peptidase S41 | low | > 104 |
| Pseudomonas sp. DMC3 | 0.62 | GFF3860 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.39 | GFF2584 | | Tail-specific protease | low | > 89 |
| Kangiella aquimarina DSM 16071 | 0.58 | B158DRAFT_2035 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.39 | B158DRAFT_1732 | | C-terminal peptidase (prc) | low | > 40 |
| Marinobacter adhaerens HP15 | 0.57 | HP15_616 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.37 | HP15_1231 | | periplasmic tail-specific proteinase | — | — |
| Acinetobacter baumannii LAC-4 | 0.56 | RR41_RS18930 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.27 | RR41_RS16485 | | carboxy terminal-processing peptidase | — | — |
| Acinetobacter radioresistens SK82 | 0.55 | MPMX26_03053 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.28 | MPMX26_00421 | | Tail-specific protease | low | > 36 |
| Rhodanobacter sp000427505 FW510-R12 | 0.55 | LRK53_RS01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | LRK53_RS17760 | | carboxy terminal-processing peptidase | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS17365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | ABZR86_RS17510 | | carboxy terminal-processing peptidase | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_17020 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.38 | OKGIIK_00110 | ctpA | C-terminal processing protease CtpA/Prc, contains a PDZ domain | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.54 | LRK55_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | LRK55_RS06215 | | carboxy terminal-processing peptidase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.54 | LRK54_RS06610 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | LRK54_RS06470 | | carboxy terminal-processing peptidase | low | > 59 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.1107.1 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) | 0.38 | Xcc-8004.914.1 | | tail-specific protease | low | > 74 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.17 | CA264_11915 | | peptidoglycan synthetase | 0.27 | CA264_13175 | | tail-specific protease | 0.38 | 60 |
| Cellulophaga baltica 18 | 0.16 | M666_RS01115 | | Mur ligase family protein | 0.25 | M666_RS02405 | | carboxy terminal-processing peptidase | low | > 67 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.16 | ABZR88_RS14425 | | UDP-N-acetylmuramate--L-alanine ligase | 0.35 | ABZR88_RS20305 | | carboxy terminal-processing peptidase | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.14 | CA265_RS10785 | | peptidoglycan synthetase | 0.35 | CA265_RS19540 | | tail-specific protease | low | > 88 |
Not shown: 19 genomes with orthologs for CSW01_12875 only; 1 genomes with orthologs for CSW01_07515 only