| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_13305 | | shikimate kinase | 1.0 | CSW01_07060 | | TetR/AcrR family transcriptional regulator | 0.67 | 1 |
| Klebsiella pneumoniae MKP103 | 0.82 | KDGMDA_06915 | | shikimate kinase AroK | 0.20 | KDGMDA_24185 | | TetR/AcrR family transcriptional regulator | — | — |
| Erwinia amylovora T8 | 0.82 | OLJFJH_04095 | | shikimate kinase AroK | 0.32 | OLJFJH_14170 | | TetR family transcriptional regulator | — | — |
| Enterobacter asburiae PDN3 | 0.82 | EX28DRAFT_4152 | | shikimate kinase (EC 2.7.1.71) | 0.27 | EX28DRAFT_2612 | | transcriptional regulator, TetR family | — | — |
| Pectobacterium carotovorum WPP14 | 0.82 | HER17_RS01775 | | shikimate kinase AroK | 0.29 | HER17_RS13910 | | TetR/AcrR family transcriptional regulator | — | — |
| Rahnella sp. WP5 | 0.81 | EX31_RS04725 | | shikimate kinase AroK | 0.29 | EX31_RS00510 | | TetR/AcrR family transcriptional regulator | low | > 89 |
| Shewanella amazonensis SB2B | 0.79 | Sama_3368 | aroK | shikimate kinase I (RefSeq) | 0.19 | Sama_2341 | | TetR family transcriptional regulator (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.78 | Shew_0213 | | shikimate kinase I (RefSeq) | 0.18 | Shew_1544 | | TetR family transcriptional regulator (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.75 | MIT1002_00448 | | Shikimate kinase 1 | 0.17 | MIT1002_00424 | | Solvent efflux pump srpABC operon corepressor | — | — |
| Dickeya dadantii 3937 | 0.75 | DDA3937_RS19550 | | shikimate kinase AroK | 0.28 | DDA3937_RS10775 | | TetR/AcrR family transcriptional regulator | — | — |
| Dickeya dianthicola 67-19 | 0.75 | HGI48_RS19680 | | shikimate kinase AroK | 0.29 | HGI48_RS10740 | | TetR/AcrR family transcriptional regulator | — | — |
| Pseudomonas sp. S08-1 | 0.55 | OH686_10020 | | Shikimate kinase I | 0.21 | OH686_06750 | | Transcriptional regulator, AcrR family | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_3714 | | Shikimate kinase | 0.20 | Psest_1564 | | Transcriptional regulator | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_0408 | | shikimate kinase | 0.31 | Psyr_3347 | | transcriptional regulator, TetR family | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_0408 | | shikimate kinase | 0.31 | Psyr_3347 | | transcriptional regulator, TetR family | — | — |
| Acinetobacter radioresistens SK82 | 0.52 | MPMX26_02811 | | Shikimate kinase 1 | 0.16 | MPMX26_03012 | | hypothetical protein | — | — |
| Pseudomonas aeruginosa PA14 | 0.52 | IKLFDK_28335 | | Shikimate kinase | 0.20 | IKLFDK_18995 | | efflux system transcriptional repressor NalC | — | — |
| Acinetobacter baumannii LAC-4 | 0.52 | RR41_RS01580 | | shikimate kinase AroK | 0.18 | RR41_RS13370 | | TetR/AcrR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_09390 | | shikimate kinase | 0.20 | AO356_06140 | | TetR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_12500 | | shikimate kinase | 0.19 | AO353_16355 | | TetR family transcriptional regulator | low | > 101 |
| Pseudomonas sp. BP01 | 0.51 | JOY50_RS09300 | aroK | shikimate kinase AroK | 0.18 | JOY50_RS26080 | | TetR/AcrR family transcriptional regulator | — | — |
| Pseudomonas putida KT2440 | 0.50 | PP_5079 | | Shikimate kinase | 0.19 | PP_1515 | | Transcriptional regulator, tetR family | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_276 | | Shikimate kinase I (EC 2.7.1.71) | 0.20 | PfGW456L13_4732 | | Transcriptional regulator, TetR family | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3755 | | Shikimate kinase I (EC 2.7.1.71) | 0.19 | Pf6N2E2_3093 | | Transcriptional regulator, TetR family | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1538 | | Shikimate kinase I (EC 2.7.1.71) | 0.18 | Pf1N1B4_3061 | | Transcriptional regulator, TetR family | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_05614 | | shikimate kinase | 0.14 | H281DRAFT_05986 | | transcriptional regulator, TetR family | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.45 | LRK53_RS05625 | | shikimate kinase | 0.14 | LRK53_RS01745 | | TetR/AcrR family transcriptional regulator | low | > 59 |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS04305 | | shikimate kinase | 0.14 | LRK54_RS06675 | | TetR/AcrR family transcriptional regulator | 0.51 | 50 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS04080 | | shikimate kinase | 0.14 | LRK55_RS06420 | | TetR/AcrR family transcriptional regulator | — | — |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_11180 | | Shikimate kinase | 0.14 | OKGIIK_16960 | | TetR family transcriptional regulator | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.42 | ABZR86_RS10475 | | shikimate kinase | 0.35 | ABZR86_RS18275 | | TetR/AcrR family transcriptional regulator | low | > 74 |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS10295 | | shikimate kinase | 0.38 | RPSI07_RS03375 | | TetR/AcrR family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS06675 | | shikimate kinase | 0.38 | UW163_RS19365 | | TetR/AcrR family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS06940 | | shikimate kinase | 0.38 | RALBFv3_RS19810 | | TetR/AcrR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS14885 | | shikimate kinase | 0.39 | RS_RS21015 | | TetR/AcrR family transcriptional regulator | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.40 | Xcc-8004.1616.1 | | Shikimate kinase I (EC 2.7.1.71) | 0.32 | Xcc-8004.1792.1 | | Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family | 0.47 | 53 |
| Magnetospirillum magneticum AMB-1 | 0.34 | AMB_RS19870 | | shikimate kinase | 0.22 | AMB_RS21070 | | TetR family transcriptional regulator | — | — |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002615 | | shikimate kinase | 0.27 | TX73_010135 | | TetR/AcrR family transcriptional regulator | — | — |
| Agrobacterium fabrum C58 | 0.34 | Atu3626 | | shikimate kinase | 0.20 | Atu4477 | | TetR family transcriptional regulator | — | — |
| Phaeobacter inhibens DSM 17395 | 0.34 | PGA1_c14090 | | shikimate kinase AroK | 0.21 | PGA1_c31580 | | putative HTH-type transcriptional regulator, TetR family | — | — |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS17675 | | shikimate kinase | 0.25 | ABIE40_RS16840 | | TetR/AcrR family transcriptional regulator | — | — |
| Bosea sp. OAE506 | 0.33 | ABIE41_RS06090 | | shikimate kinase | 0.26 | ABIE41_RS08455 | | TetR/AcrR family transcriptional regulator | — | — |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_3449 | | Shikimate kinase I (EC 2.7.1.71) | 0.20 | Ac3H11_620 | | Transcriptional regulator, TetR family | low | > 79 |
| Sinorhizobium meliloti 1021 | 0.32 | SMc00695 | | shikimate kinase | 0.21 | SMc03169 | | transcriptional regulator | — | — |
| Dinoroseobacter shibae DFL-12 | 0.31 | Dshi_1609 | | Shikimate kinase (RefSeq) | 0.19 | Dshi_0106 | | transcriptional regulator, TetR family (RefSeq) | — | — |
| Sphingobium sp. HT1-2 | 0.30 | GFF2419 | | Shikimate kinase I (EC 2.7.1.71) | 0.25 | GFF3798 | | Transcriptional regulator, AcrR family | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_3592 | | shikimate kinase (EC 2.7.1.71) | 0.17 | Ga0059261_3939 | | transcriptional regulator, TetR family | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.28 | DVU0892 | aroK-1 | shikimate kinase (TIGR) | 0.27 | DVU2819 | | transcriptional regulator, TetR family (TIGR) | low | > 55 |
Not shown: 51 genomes with orthologs for CSW01_13305 only; 3 genomes with orthologs for CSW01_07060 only