Conservation of cofitness between CSW01_18660 and CSW01_06080 in Vibrio cholerae E7946 ATCC 55056

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_18660 glycerate kinase 1.0 CSW01_06080 histidine ammonia-lyase 0.41 17
Serratia liquefaciens MT49 0.55 IAI46_05265 glycerate kinase 0.72 IAI46_03660 histidine ammonia-lyase low > 87
Shewanella loihica PV-4 0.53 Shew_2534 glycerate kinase (RefSeq) 0.73 Shew_3756 histidine ammonia-lyase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.52 Sama_3228 glycerate kinase (RefSeq) 0.38 Sama_1631 Histidine ammonia-lyase (EC 4.3.1.3) (from data) low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF4840 Glycerate kinase (EC 2.7.1.31) 0.68 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) low > 78
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2867 glycerate kinase 0.71 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) low > 76
Escherichia coli ECOR38 0.50 HEPCGN_06530 glxK glycerate 3-kinase 0.21 HEPCGN_01360 histidine ammonia-lyase low > 88
Enterobacter sp. TBS_079 0.50 MPMX20_03656 Glycerate 2-kinase 0.70 MPMX20_01400 Histidine ammonia-lyase low > 85
Klebsiella pneumoniae MKP103 0.49 KDGMDA_03350 glycerate kinase 0.69 KDGMDA_17005 histidine ammonia-lyase low > 95
Klebsiella michiganensis M5al 0.49 BWI76_RS22820 glycerate kinase 0.69 BWI76_RS08740 Histidine ammonia-lyase (EC 4.3.1.3) (from data) low > 92
Erwinia amylovora T8 0.48 OLJFJH_09230 glycerate kinase 0.55 OLJFJH_16540 histidine ammonia-lyase low > 58
Rahnella sp. WP5 0.48 EX31_RS07975 glycerate kinase 0.56 EX31_RS06755 histidine ammonia-lyase low > 89
Pantoea agglomerans CFBP13505 P0401 0.48 PagCFBP13505_RS16865 glycerate kinase 0.53 PagCFBP13505_RS04045 histidine ammonia-lyase low > 74
Pantoea sp. MT58 0.47 IAI47_04105 glycerate kinase 0.53 IAI47_13275 histidine ammonia-lyase low > 76
Shewanella sp. ANA-3 0.47 Shewana3_2685 glycerate kinase (RefSeq) 0.74 Shewana3_0101 histidine ammonia-lyase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO1770 glycerate kinase, putative (NCBI ptt file) 0.74 SO0098 hutH histidine ammonia-lyase (NCBI ptt file) low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_3115 Glycerate kinase 0.69 Psyr_4833 histidine ammonia-lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_3115 Glycerate kinase 0.69 Psyr_4833 histidine ammonia-lyase low > 86
Dickeya dadantii 3937 0.46 DDA3937_RS17030 glycerate kinase 0.54 DDA3937_RS14995 histidine ammonia-lyase — —
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_26900 glycerate kinase 0.69 AO353_12270 histidine ammonia-lyase low > 101
Dickeya dianthicola 67-19 0.46 HGI48_RS17085 glycerate kinase 0.54 HGI48_RS15090 histidine ammonia-lyase — —
Dickeya dianthicola ME23 0.46 DZA65_RS18160 glycerate kinase 0.54 DZA65_RS15835 histidine ammonia-lyase low > 75
Pseudomonas sp. DMC3 0.46 GFF2931 Glycerate 2-kinase 0.70 GFF4056 Histidine ammonia-lyase low > 89
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.5387.1 Glycerate kinase (EC 2.7.1.31) 0.49 Xcc-8004.3296.1 Histidine ammonia-lyase (EC 4.3.1.3) low > 74
Pseudomonas orientalis W4I3 0.45 QF045_RS15980 glycerate kinase 0.70 QF045_RS04815 histidine ammonia-lyase low > 93
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_2941 Glycerate kinase (EC 2.7.1.31) 0.69 PfGW456L13_320 Histidine ammonia-lyase (EC 4.3.1.3) (from data) low > 87
Pseudomonas fluorescens SBW25 0.44 PFLU_RS14645 glycerate kinase 0.70 PFLU_RS01805 histidine ammonia-lyase low > 109
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_460 Glycerate kinase (EC 2.7.1.31) 0.69 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) low > 103
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS14645 glycerate kinase 0.70 PFLU_RS01805 histidine ammonia-lyase low > 109
Pseudomonas simiae WCS417 0.44 PS417_13970 glycerate kinase 0.71 PS417_01750 histidine ammonia-lyase low > 88
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_22870 glycerate kinase 0.69 AO356_09600 histidine ammonia-lyase low > 104
Pseudomonas sp. RS175 0.44 PFR28_02469 Glycerate 2-kinase 0.69 PFR28_04971 Histidine ammonia-lyase low > 88
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_02945 Glycerate 2-kinase 0.70 GEMAOFIL_00574 Histidine ammonia-lyase low > 96
Pseudomonas sp. S08-1 0.44 OH686_04780 Glycerate kinase 0.70 OH686_16755 histidine ammonia-lyase low > 80
Pseudomonas segetis P6 0.43 ACVTMO_RS17280 glycerate kinase 0.70 ACVTMO_RS19630 hutH histidine ammonia-lyase low > 75
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_4998 Glycerate kinase (EC 2.7.1.31) 0.69 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) — —
Pseudomonas putida KT2440 0.42 PP_3178 glycerate kinase 0.70 PP_5032 Histidine ammonia-lyase low > 96
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS12190 glycerate kinase 0.60 QEN71_RS23515 histidine ammonia-lyase low > 153
Pseudomonas aeruginosa PA14 0.42 IKLFDK_04815 glycerate kinase 0.69 IKLFDK_28030 histidine ammonia-lyase low > 98
Pseudomonas aeruginosa MRSN321 0.42 DY961_RS07200 glycerate kinase 0.69 DY961_RS11315 hutH;go_function=histidine histidine ammonia-lyase low > 100
Pseudomonas aeruginosa PUPa3 0.42 DQ20_RS45585 glycerate kinase 0.69 DQ20_RS50780 hutH;go_function=histidine histidine ammonia-lyase low > 101
Pseudomonas sp. BP01 0.41 JOY50_RS26670 glycerate kinase 0.70 JOY50_RS09525 hutH histidine ammonia-lyase low > 84
Pseudomonas sp. SVBP6 0.41 COO64_RS23775 glycerate kinase 0.68 COO64_RS13415 hutH histidine ammonia-lyase low > 93
Acinetobacter baumannii LAC-4 0.40 RR41_RS04375 glycerate kinase 0.71 RR41_RS00385 histidine ammonia-lyase low > 55
Bacteroides thetaiotaomicron VPI-5482 0.36 BT1437 conserved hypothetical protein (NCBI ptt file) 0.36 BT2690 histidine ammonia-lyase (NCBI ptt file) 0.34 78
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS12910 glycerate kinase 0.37 HMPREF1058_RS02545 histidine ammonia-lyase low > 67
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS08645 glycerate kinase 0.36 HMPREF1078_RS11575 histidine ammonia-lyase low > 61
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS16785 glycerate kinase 0.35 HMPREF1181_RS00340 histidine ammonia-lyase low > 56
Cellulophaga baltica 18 0.33 M666_RS15730 glycerate kinase 0.39 M666_RS07225 histidine ammonia-lyase low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.33 ABZR88_RS00815 glycerate kinase 0.24 ABZR88_RS19260 histidine ammonia-lyase low > 71
Bacteroides ovatus ATCC 8483 0.32 BACOVA_02041 glycerate kinase 0.37 BACOVA_00991 histidine ammonia-lyase low > 96
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS10055 glycerate kinase 0.29 HSERO_RS22680 histidine ammonia-lyase low > 78
Burkholderia phytofirmans PsJN 0.24 BPHYT_RS09440 glycerate kinase 0.58 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) low > 109
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00894 glycerate kinase 0.58 H281DRAFT_04873 histidine ammonia-lyase low > 103
Paraburkholderia graminis OAS925 0.24 ABIE53_002112 glycerate kinase 0.58 ABIE53_001729 histidine ammonia-lyase low > 113
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS23230 glycerate kinase 0.70 RR42_RS14640 histidine ammonia-lyase low > 128
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_4031 glycerate kinase 0.38 Echvi_0202 histidine ammonia-lyase low > 79

Not shown: 19 genomes with orthologs for CSW01_18660 only; 35 genomes with orthologs for CSW01_06080 only