Conservation of cofitness between CSW01_00645 and CSW01_04065 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00645 DUF484 domain-containing protein 1.0 CSW01_04065 D-amino acid dehydrogenase small subunit 0.41 10
Dickeya dianthicola 67-19 0.22 HGI48_RS20050 DUF484 domain-containing protein 0.55 HGI48_RS11195 D-amino acid dehydrogenase low > 71
Dickeya dadantii 3937 0.22 DDA3937_RS19895 DUF484 domain-containing protein 0.54 DDA3937_RS11170 D-amino acid dehydrogenase low > 74
Dickeya dianthicola ME23 0.22 DZA65_RS21095 DUF484 domain-containing protein 0.54 DZA65_RS11540 D-amino acid dehydrogenase low > 75
Rahnella sp. WP5 0.21 EX31_RS15160 DUF484 domain-containing protein 0.56 EX31_RS10485 D-amino acid dehydrogenase low > 89
Shewanella amazonensis SB2B 0.21 Sama_3248 hypothetical protein (RefSeq) 0.17 Sama_1533 D-amino-acid dehydrogenase (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.21 LU632_RS24140 DUF484 domain-containing protein 0.56 LU632_RS13070 D-amino acid dehydrogenase — —
Erwinia tracheiphila HP pepo 2.2 0.21 IJEDHG_08785 DUF484 domain-containing protein 0.56 IJEDHG_22535 D-amino acid dehydrogenase — —
Erwinia amylovora T8 0.21 OLJFJH_06410 DUF484 domain-containing protein 0.57 OLJFJH_13160 D-amino acid dehydrogenase 0.62 50
Pantoea agglomerans CFBP13505 P0401 0.21 PagCFBP13505_RS15385 DUF484 domain-containing protein 0.57 PagCFBP13505_RS02725 D-amino acid dehydrogenase low > 74
Pantoea sp. MT58 0.21 IAI47_18405 DUF484 domain-containing protein 0.57 IAI47_08890 D-amino acid dehydrogenase low > 76
Serratia liquefaciens MT49 0.21 IAI46_00720 DUF484 domain-containing protein 0.56 IAI46_14460 D-amino acid dehydrogenase low > 87
Pectobacterium carotovorum WPP14 0.20 HER17_RS01345 DUF484 domain-containing protein 0.56 HER17_RS11170 D-amino acid dehydrogenase low > 75
Pseudomonas sp. S08-1 0.20 OH686_13790 Protein of unknown function DUF484 0.57 OH686_13685 D-amino acid dehydrogenase low > 80
Pseudomonas segetis P6 0.20 ACVTMO_RS22520 DUF484 family protein 0.55 ACVTMO_RS00040 dadA D-amino acid dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.19 Psyr_0184 Protein of unknown function DUF484 0.55 Psyr_0235 D-amino acid dehydrogenase small subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.19 Psyr_0184 Protein of unknown function DUF484 0.55 Psyr_0235 D-amino acid dehydrogenase small subunit low > 86
Pseudomonas fluorescens SBW25 0.19 PFLU_RS29275 DUF484 family protein 0.57 PFLU_RS29380 D-amino acid dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.19 PFLU_RS29275 DUF484 family protein 0.57 PFLU_RS29380 D-amino acid dehydrogenase low > 109
Pseudomonas aeruginosa MRSN321 0.19 DY961_RS12280 DUF484 family protein 0.56 DY961_RS12410 dadA;inference=COORDINATES D-amino acid dehydrogenase low > 100
Pseudomonas aeruginosa PUPa3 0.19 DQ20_RS49845 DUF484 family protein 0.56 DQ20_RS49720 dadA;inference=COORDINATES D-amino acid dehydrogenase low > 101
Pseudomonas stutzeri RCH2 0.19 Psest_3766 Uncharacterized protein conserved in bacteria 0.57 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) low > 67
Pseudomonas aeruginosa PA14 0.19 IKLFDK_27055 DUF484 domain-containing protein 0.56 IKLFDK_26930 D-amino acid dehydrogenase low > 98
Shewanella loihica PV-4 0.19 Shew_0324 hypothetical protein (RefSeq) 0.16 Shew_2360 D-hydroxyproline dehydrogenase (from data) low > 60
Marinobacter adhaerens HP15 0.18 HP15_249 protein containing DUF484 0.38 HP15_2610 D-amino acid dehydrogenase small subunit low > 73
Pseudomonas putida KT2440 0.18 PP_5229 conserved protein of unknown function 0.56 PP_4434 D-amino acid dehydrogenase 1 small subunit low > 96
Pseudomonas sp. BP01 0.18 JOY50_RS22605 DUF484 family protein 0.55 JOY50_RS09125 dadA D-amino acid dehydrogenase low > 84
Pseudomonas fluorescens FW300-N2E3 0.18 AO353_09045 hypothetical protein 0.57 AO353_09155 amino acid dehydrogenase low > 101
Pseudomonas sp. SVBP6 0.18 COO64_RS01265 DUF484 family protein 0.56 COO64_RS01395 dadA D-amino acid dehydrogenase low > 93
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF238 Protein of unknown function DUF484 0.55 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 78
Rhodanobacter sp000427505 FW510-R12 0.18 LRK53_RS02320 DUF484 family protein 0.57 LRK53_RS09560 D-amino acid dehydrogenase low > 59
Enterobacter sp. TBS_079 0.17 MPMX20_04466 hypothetical protein 0.55 MPMX20_02699 D-amino acid dehydrogenase low > 85
Enterobacter asburiae PDN3 0.17 EX28DRAFT_4479 Uncharacterized protein conserved in bacteria 0.55 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) low > 76
Klebsiella pneumoniae MKP103 0.17 KDGMDA_09695 DUF484 domain-containing protein 0.55 KDGMDA_25050 D-amino acid dehydrogenase low > 95
Pseudomonas orientalis W4I3 0.17 QF045_RS01955 DUF484 family protein 0.57 QF045_RS02055 D-amino acid dehydrogenase low > 93
Pseudomonas simiae WCS417 0.17 PS417_27590 hypothetical protein 0.57 PS417_27705 amino acid dehydrogenase low > 88
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_2172 Protein of unknown function DUF484 0.57 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 87
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_12730 hypothetical protein 0.56 AO356_12620 amino acid dehydrogenase low > 104
Pseudomonas lactucae CFBP13502 0.17 GEMAOFIL_05656 hypothetical protein 0.57 GEMAOFIL_00008 D-amino acid dehydrogenase 1 low > 96
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_843 Protein of unknown function DUF484 0.56 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 87
Escherichia coli ECRC98 0.17 JDDGAC_18050 yigA Uncharacterized protein YigA 0.55 JDDGAC_06220 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC99 0.17 KEDOAH_13725 yigA Uncharacterized protein YigA 0.55 KEDOAH_25305 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC102 0.17 NIAGMN_12180 yigA Uncharacterized protein YigA 0.55 NIAGMN_27930 dadA D-amino acid dehydrogenase low > 80
Escherichia coli ECRC100 0.17 OKFHMN_14425 yigA Uncharacterized protein YigA 0.55 OKFHMN_28290 dadA D-amino acid dehydrogenase — —
Pseudomonas sp. DMC3 0.17 GFF369 hypothetical protein 0.56 GFF390 D-amino acid dehydrogenase 1 low > 89
Escherichia coli ECRC101 0.16 MCAODC_04930 yigA Uncharacterized protein YigA 0.55 MCAODC_21880 dadA D-amino acid dehydrogenase low > 87
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_4417 Protein of unknown function DUF484 0.56 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 103
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS08540 DUF484 family protein 0.57 LRK54_RS00590 D-amino acid dehydrogenase low > 59
Escherichia coli BL21 0.16 ECD_03686 DUF484 family protein 0.55 ECD_01164 D-amino acid dehydrogenase low > 61
Rhodanobacter denitrificans MT42 0.16 LRK55_RS08305 DUF484 family protein 0.57 LRK55_RS00360 D-amino acid dehydrogenase low > 63
Escherichia coli ECOR27 0.16 NOLOHH_06555 yigA Uncharacterized protein YigA 0.55 NOLOHH_20725 dadA D-amino acid dehydrogenase low > 76
Escherichia coli BW25113 0.16 b3810 yigA hypothetical protein (NCBI) 0.55 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) low > 76
Escherichia coli ECOR38 0.16 HEPCGN_13130 yigA Uncharacterized protein YigA 0.55 HEPCGN_24750 dadA D-amino acid dehydrogenase low > 88
Escherichia coli ECRC62 0.16 BNILDI_04980 yigA Uncharacterized protein YigA 0.55 BNILDI_18890 dadA D-amino acid dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_04240 hypothetical protein 0.55 OHPLBJKB_02500 D-amino acid dehydrogenase low > 74
Escherichia coli Nissle 1917 0.16 ECOLIN_RS21870 DUF484 domain-containing protein 0.55 ECOLIN_RS07185 D-amino acid dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.16 ABZR86_RS15020 DUF484 family protein 0.18 ABZR86_RS08930 FAD-dependent oxidoreductase — —
Escherichia fergusonii Becca 0.16 EFB2_04827 hypothetical protein 0.55 EFB2_02743 D-amino acid dehydrogenase low > 86
Pseudomonas sp. RS175 0.16 PFR28_04377 hypothetical protein 0.56 PFR28_04399 D-amino acid dehydrogenase 1 low > 88
Klebsiella michiganensis M5al 0.16 BWI76_RS01205 DUF484 family protein 0.56 BWI76_RS17735 D-amino acid dehydrogenase small subunit low > 92
Rhodanobacter sp. FW510-T8 0.15 OKGIIK_15330 DUF484 domain-containing protein 0.57 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit low > 53
Castellaniella sp019104865 MT123 0.15 ABCV34_RS13460 DUF484 family protein 0.52 ABCV34_RS10810 D-amino acid dehydrogenase low > 48
Methylophilus sp. DMC18 0.14 GFF1536 hypothetical protein 0.54 GFF2173 D-amino acid dehydrogenase 1 low > 43
Dechlorosoma suillum PS 0.14 Dsui_0650 hypothetical protein 0.42 Dsui_0501 glycine/D-amino acid oxidase, deaminating — —
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS21470 hypothetical protein 0.56 HSERO_RS08375 D-amino acid dehydrogenase small subunit low > 78
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.846.1 Protein of unknown function DUF484 0.56 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 74

Not shown: 5 genomes with orthologs for CSW01_00645 only; 33 genomes with orthologs for CSW01_04065 only