Conservation of cofitness between CSW01_19375 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_19375 NAD(P)-dependent oxidoreductase 1.0 CSW01_03470 peptide chain release factor 3 0.73 19
Shewanella sp. ANA-3 0.72 Shewana3_3687 short-chain dehydrogenase/reductase SDR (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Pseudomonas protegens RBAN4 0.66 FABNJH_23550 Oxidoreductase 0.68 FABNJH_04530 prfC peptide chain release factor 3 — —
Pseudomonas sp. BP01 0.60 JOY50_RS02225 SDR family oxidoreductase 0.69 JOY50_RS22670 peptide chain release factor 3 — —
Enterobacter sp. TBS_079 0.37 MPMX20_02125 putative oxidoreductase 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Acinetobacter baumannii LAC-4 0.36 RR41_RS16290 SDR family oxidoreductase 0.67 RR41_RS16200 peptide chain release factor 3 low > 55
Acinetobacter radioresistens SK82 0.36 MPMX26_00858 putative oxidoreductase 0.68 MPMX26_00476 Peptide chain release factor RF3 low > 36
Variovorax sp. SCN45 0.35 GFF4612 Short-chain dehydrogenase/reductase SDR 0.51 GFF2045 Peptide chain release factor 3 low > 127
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS01475 oxidoreductase 0.62 HSERO_RS14640 peptide chain release factor 3 low > 78
Lysobacter sp. OAE881 0.35 ABIE51_RS11295 SDR family oxidoreductase 0.66 ABIE51_RS16210 peptide chain release factor 3 — —
Pseudomonas stutzeri RCH2 0.35 Psest_0892 Short-chain alcohol dehydrogenase of unknown specificity 0.70 Psest_3351 peptide chain release factor 3 low > 67
Sinorhizobium meliloti 1021 0.34 SMa2343 oxidoreductase 0.49 SMc00427 peptide chain release factor RF-3 protein low > 103
Bosea sp. OAE506 0.34 ABIE41_RS18855 SDR family oxidoreductase 0.47 ABIE41_RS06180 peptide chain release factor 3 low > 77
Alteromonas macleodii MIT1002 0.34 MIT1002_02198 putative oxidoreductase 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Dickeya dianthicola 67-19 0.34 HGI48_RS11895 SDR family oxidoreductase 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0194 Short-chain dehydrogenase/reductase SDR 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS36075 oxidoreductase 0.61 RR42_RS37475 peptide chain release factor 3 0.22 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0194 Short-chain dehydrogenase/reductase SDR 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Rhizobium sp. OAE497 0.34 ABIE40_RS03905 SDR family oxidoreductase 0.47 ABIE40_RS01450 peptide chain release factor 3 low > 107
Escherichia coli ECRC99 0.33 KEDOAH_18665 ydfG oxidoreductase 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Agrobacterium fabrum C58 0.33 Atu0857 oxidoreductase 0.47 Atu0315 peptide chain release factor 3 — —
Pseudomonas sp. DMC3 0.33 GFF1051 putative oxidoreductase 0.69 GFF5016 Peptide chain release factor RF3 low > 89
Escherichia coli ECRC102 0.33 NIAGMN_07340 ydfG oxidoreductase 0.86 NIAGMN_09130 prfC peptide chain release factor 3 low > 80
Escherichia coli ECRC101 0.33 MCAODC_28500 ydfG oxidoreductase 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 87
Escherichia coli ECRC98 0.33 JDDGAC_12925 ydfG oxidoreductase 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 87
Escherichia coli ECRC100 0.33 OKFHMN_09285 ydfG oxidoreductase 0.86 OKFHMN_11280 prfC peptide chain release factor 3 low > 79
Serratia liquefaciens MT49 0.33 IAI46_24860 SDR family oxidoreductase 0.86 IAI46_02875 peptide chain release factor 3 low > 87
Cellulophaga baltica 18 0.33 M666_RS16370 SDR family oxidoreductase 0.47 M666_RS09230 peptide chain release factor 3 low > 67
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_1884 oxidoreductase, short-chain dehydrogenase/reductase family 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS05975 oxidoreductase 0.54 AZOBR_RS14730 peptide chain release factor 3 — —
Pantoea sp. MT58 0.33 IAI47_19010 SDR family oxidoreductase 0.85 IAI47_03375 peptide chain release factor 3 low > 76
Sphingobium sp. HT1-2 0.33 GFF229 Short-chain dehydrogenase/reductase SDR 0.48 GFF3317 Peptide chain release factor 3 low > 95
Azospirillum sp. SherDot2 0.33 MPMX19_03547 putative oxidoreductase 0.53 MPMX19_01192 Peptide chain release factor 3 — —
Ralstonia solanacearum PSI07 0.32 RPSI07_RS06580 NAD(P)-dependent oxidoreductase 0.59 RPSI07_RS07810 peptide chain release factor 3 low > 81
Enterobacter asburiae PDN3 0.32 EX28DRAFT_2392 Short-chain alcohol dehydrogenase of unknown specificity 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Synechocystis sp000284455 PCC 6803 0.32 SGL_RS15980 SDR family oxidoreductase 0.43 SGL_RS06700 peptide chain release factor 3 low > 52
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_09700 Oxidoreductase 0.66 OKGIIK_01430 prfC peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_3134 Short-chain dehydrogenase/reductase SDR 0.69 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pantoea agglomerans CFBP13505 P0401 0.32 PagCFBP13516_RS19465 SDR family oxidoreductase 0.85 PagCFBP13516_RS03605 prfC peptide chain release factor 3 low > 80
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS03515 SDR family oxidoreductase 0.43 A4249_RS15275 peptide chain release factor 3 low > 48
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_06581 NADP-dependent 3-hydroxy acid dehydrogenase YdfG 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Pseudomonas sp. S08-1 0.29 OH686_18360 Short-chain dehydrogenase/reductase SDR 0.69 OH686_08765 peptide chain release factor 3 — —
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS15110 NAD(P)-dependent oxidoreductase 0.46 CA265_RS18435 peptide chain release factor 3 low > 88
Pseudomonas orientalis W4I3 0.28 QF045_RS20925 SDR family oxidoreductase 0.69 QF045_RS07015 peptide chain release factor 3 low > 93
Ralstonia solanacearum UW163 0.28 UW163_RS18430 NAD(P)-dependent oxidoreductase 0.60 UW163_RS16595 peptide chain release factor 3 — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS17040 NAD(P)-dependent oxidoreductase 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Klebsiella michiganensis M5al 0.28 BWI76_RS03315 clavaldehyde dehydrogenase 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0585 Short-chain alcohol dehydrogenase of unknown specificity 0.77 B158DRAFT_2239 peptide chain release factor 3 low > 40
Pseudomonas fluorescens SBW25 0.27 PFLU_RS15455 SDR family oxidoreductase 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Bacteroides ovatus ATCC 8483 0.27 BACOVA_01762 hypothetical protein 0.47 BACOVA_04458 peptide chain release factor 3 low > 96
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS15455 SDR family oxidoreductase 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Castellaniella sp019104865 MT123 0.27 ABCV34_RS03925 SDR family NAD(P)-dependent oxidoreductase 0.53 ABCV34_RS12505 peptide chain release factor 3 low > 48
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS16480 SDR family oxidoreductase 0.47 HMPREF1058_RS07935 peptide chain release factor 3 — —
Rhodospirillum rubrum S1H 0.27 Rru_A2127 Serine 3-dehydrogenase (NCBI) 0.53 Rru_A2497 Peptide chain release factor 3 (NCBI) low > 58
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS12400 SDR family oxidoreductase 0.47 ABI39_RS00385 peptide chain release factor 3 — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_1820 Short-chain alcohol dehydrogenase of unknown specificity 0.49 Echvi_0584 peptide chain release factor 3 0.30 25
Acidovorax sp. GW101-3H11 0.26 Ac3H11_2710 short-chain dehydrogenase/reductase SDR 0.52 Ac3H11_3041 Peptide chain release factor 3 — —
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS12415 SDR family oxidoreductase 0.46 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Rahnella sp. WP5 0.26 EX31_RS07075 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG 0.86 EX31_RS04095 peptide chain release factor 3 — —
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU1784 oxidoreductase, short-chain dehydrogenase/reductase family (TIGR) 0.59 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55
Bacteroides thetaiotaomicron VPI-5482 0.25 BT0409 putative short-chain dehydrogenase (NCBI ptt file) 0.46 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Pseudomonas aeruginosa PUPa3 0.25 NPBIFN_05217 Sulfoacetaldehyde reductase 2 0.69 NPBIFN_01060 prfC peptide chain release factor 3 low > 101
Pseudomonas aeruginosa MRSN321 0.25 PFGADD_05141 Sulfoacetaldehyde reductase 2 0.69 PFGADD_01056 prfC peptide chain release factor 3 low > 99

Not shown: 4 genomes with orthologs for CSW01_19375 only; 53 genomes with orthologs for CSW01_03470 only