Conservation of cofitness between CSW01_03875 and CSW01_03460 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03875 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 1.0 CSW01_03460 ribosomal-protein-alanine N-acetyltransferase 0.44 17
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0107 RNA methyltransferase, TrmH family, group 1 0.33 EX28DRAFT_3581 ribosomal-protein-alanine acetyltransferase low > 76
Enterobacter sp. TBS_079 0.65 MPMX20_03413 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.31 MPMX20_00671 [Ribosomal protein S18]-alanine N-acetyltransferase low > 85
Klebsiella pneumoniae MRSN742743 0.65 GJGHJB_01247 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 GJGHJB_04305 rimI ribosomal protein S18-alanine N-acetyltransferase low > 83
Klebsiella michiganensis M5al 0.65 BWI76_RS21170 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.32 BWI76_RS04090 ribosomal-protein-alanine N-acetyltransferase RimI low > 92
Klebsiella pneumoniae MKP103 0.65 KDGMDA_28295 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 KDGMDA_12360 ribosomal protein S18-alanine N-acetyltransferase low > 94
Rahnella sp. WP5 0.64 EX31_RS20555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.32 EX31_RS04110 ribosomal protein S18-alanine N-acetyltransferase low > 89
Serratia liquefaciens MT49 0.64 IAI46_19365 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.31 IAI46_02870 ribosomal protein S18-alanine N-acetyltransferase low > 87
Escherichia coli ECRC102 0.64 NIAGMN_19380 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 NIAGMN_09140 rimI ribosomal protein S18-alanine N-acetyltransferase low > 80
Escherichia coli ECRC100 0.64 OKFHMN_21610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 OKFHMN_11290 rimI ribosomal protein S18-alanine N-acetyltransferase low > 79
Escherichia coli ECRC99 0.64 KEDOAH_06610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 KEDOAH_16855 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECRC62 0.64 BNILDI_12080 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 BNILDI_07990 rimI ribosomal protein S18-alanine N-acetyltransferase low > 75
Escherichia coli ECRC98 0.64 JDDGAC_25285 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 JDDGAC_14885 rimI ribosomal protein S18-alanine N-acetyltransferase low > 87
Escherichia coli ECRC101 0.64 MCAODC_12140 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 MCAODC_01805 rimI ribosomal protein S18-alanine N-acetyltransferase low > 87
Escherichia coli BW25113 0.64 b2532 yfhQ predicted methyltransferase (NCBI) 0.30 b4373 rimI ribosomal-protein-alanine N-acetyltransferase (NCBI) low > 76
Escherichia coli BL21 0.64 ECD_02424 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent 0.30 ECD_04248 ribosomal-protein-S18-alanine N-acetyltransferase low > 61
Escherichia coli Nissle 1917 0.64 ECOLIN_RS14375 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 ECOLIN_RS25100 ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECOR27 0.64 NOLOHH_13280 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 NOLOHH_03610 rimI ribosomal protein S18-alanine N-acetyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_01177 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11 0.30 OHPLBJKB_03689 Ribosomal-protein-alanine acetyltransferase low > 74
Escherichia fergusonii Becca 0.64 EFB2_01358 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.30 EFB2_04074 [Ribosomal protein S18]-alanine N-acetyltransferase low > 86
Pectobacterium carotovorum WPP14 0.64 HER17_RS06005 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 HER17_RS18090 ribosomal protein S18-alanine N-acetyltransferase low > 75
Escherichia coli ECOR38 0.63 HEPCGN_20750 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 HEPCGN_09295 rimI ribosomal protein S18-alanine N-acetyltransferase low > 88
Dickeya dianthicola ME23 0.63 DZA65_RS16730 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.34 DZA65_RS03375 ribosomal protein S18-alanine N-acetyltransferase low > 75
Dickeya dianthicola 67-19 0.63 HGI48_RS15655 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.34 HGI48_RS03330 ribosomal protein S18-alanine N-acetyltransferase low > 71
Dickeya dadantii 3937 0.63 DDA3937_RS15555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.37 DDA3937_RS03180 ribosomal protein S18-alanine N-acetyltransferase low > 74
Shewanella oneidensis MR-1 0.61 SO2261 RNA methyltransferase, TrmH family, group 1 (NCBI ptt file) 0.29 SO1160 rimI ribosomal-protein-alanine acetyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.61 Shewana3_2283 RNA methyltransferase (RefSeq) 0.34 Shewana3_0987 SSU ribosomal protein S18P alanine acetyltransferase (RefSeq) — —
Erwinia tracheiphila HP pepo 2.2 0.61 IJEDHG_02880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.29 IJEDHG_05105 rimI ribosomal protein S18-alanine N-acetyltransferase low > 61
Erwinia tracheiphila SCR3 0.61 LU632_RS17880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.29 LU632_RS03760 rimI ribosomal protein S18-alanine N-acetyltransferase low > 73
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13516_RS05285 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 PagCFBP13516_RS16675 rimI ribosomal protein S18-alanine N-acetyltransferase low > 80
Erwinia amylovora T8 0.60 OLJFJH_10355 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.32 OLJFJH_01915 ribosomal protein S18-alanine N-acetyltransferase low > 58
Pantoea sp. MT58 0.60 IAI47_04995 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 IAI47_16365 ribosomal protein S18-alanine N-acetyltransferase low > 76
Shewanella loihica PV-4 0.59 Shew_2320 RNA methyltransferase (RefSeq) 0.28 Shew_2943 ribosomal-protein-alanine acetyltransferase (RefSeq) — —
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_06660 RNA methyltransferase 0.36 AO356_16260 ribosomal-protein-alanine acetyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_3192 tRNA:Cm32/Um32 methyltransferase 0.36 Pf6N2E2_5188 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_15820 RNA methyltransferase 0.36 AO353_14585 ribosomal-protein-alanine acetyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_868 tRNA:Cm32/Um32 methyltransferase 0.35 Pf1N1B4_2891 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 87
Pseudomonas protegens RBAN4 0.52 FABNJH_25135 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.27 FABNJH_26440 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Pseudomonas sp. RS175 0.52 PFR28_00283 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 0.36 PFR28_03681 [Ribosomal protein S18]-alanine N-acetyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_4876 tRNA:Cm32/Um32 methyltransferase 0.35 PfGW456L13_1551 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 87
Pseudomonas orientalis W4I3 0.52 QF045_RS25435 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.34 QF045_RS06355 ribosomal protein S18-alanine N-acetyltransferase low > 93
Pseudomonas sp. DMC3 0.51 GFF4353 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 0.34 GFF4515 [Ribosomal protein S18]-alanine N-acetyltransferase low > 89
Pseudomonas simiae WCS417 0.51 PS417_23215 RNA methyltransferase 0.33 PS417_03300 alanine acetyltransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS24870 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.34 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase low > 109
Pseudomonas fluorescens SBW25 0.51 PFLU_RS24870 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.34 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase low > 109
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_1234 RNA methyltransferase TrmH, group 1 0.29 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_1234 RNA methyltransferase TrmH, group 1 0.29 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 86
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_04795 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 0.34 GEMAOFIL_00878 [Ribosomal protein S18]-alanine N-acetyltransferase low > 96
Pseudomonas sp. SVBP6 0.49 COO64_RS03880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.27 COO64_RS03120 rimI ribosomal protein S18-alanine N-acetyltransferase low > 91
Pseudomonas putida KT2440 0.49 PP_0839 tRNA Cm32/Um32 methyltransferase 0.34 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase low > 96
Pseudomonas aeruginosa PUPa3 0.49 NPBIFN_01162 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 NPBIFN_04971 rimI ribosomal protein S18-alanine N-acetyltransferase low > 101
Pseudomonas aeruginosa MRSN321 0.49 PFGADD_01144 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 PFGADD_04894 rimI ribosomal protein S18-alanine N-acetyltransferase low > 99
Pseudomonas aeruginosa PA14 0.49 IKLFDK_19655 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.33 IKLFDK_00095 ribosomal protein S18-alanine N-acetyltransferase low > 98
Pseudomonas sp. S08-1 0.48 OH686_17460 tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase 0.30 OH686_08035 ribosomal-protein-alanine acetyltransferase low > 80
Pseudomonas sp. BP01 0.48 JOY50_RS22835 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.34 JOY50_RS24755 rimI ribosomal protein S18-alanine N-acetyltransferase low > 84
Pseudomonas stutzeri RCH2 0.47 Psest_1248 RNA methyltransferase, TrmH family, group 1 0.33 Psest_1058 ribosomal-protein-alanine acetyltransferase low > 67
Pseudomonas segetis P6 0.47 ACVTMO_RS07450 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.32 ACVTMO_RS06440 rimI ribosomal protein S18-alanine N-acetyltransferase low > 75
Marinobacter adhaerens HP15 0.46 HP15_1484 RNA methyltransferase, TrmH family, group 1 0.29 HP15_540 ribosomal-protein-alanine acetyltransferase low > 73
Lysobacter sp. OAE881 0.44 ABIE51_RS14985 RNA methyltransferase 0.32 ABIE51_RS04455 ribosomal protein S18-alanine N-acetyltransferase low > 62
Dechlorosoma suillum PS 0.39 Dsui_2367 RNA methyltransferase, TrmH family, group 1 0.26 Dsui_2404 ribosomal-protein-alanine acetyltransferase low > 51
Methylophilus sp. DMC18 0.39 GFF437 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 0.30 GFF2609 [Ribosomal protein S18]-alanine N-acetyltransferase low > 43
Acinetobacter baumannii LAC-4 0.38 RR41_RS11515 RNA methyltransferase 0.30 RR41_RS14925 ribosomal protein S18-alanine N-acetyltransferase low > 55
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.2282.1 tRNA:Cm32/Um32 methyltransferase 0.31 Xcc-8004.4455.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 74
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS08585 RNA methyltransferase 0.29 HSERO_RS10720 alanine acetyltransferase low > 78
Acinetobacter radioresistens SK82 0.36 MPMX26_01876 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 0.30 MPMX26_02428 [Ribosomal protein S18]-alanine N-acetyltransferase low > 36
Paraburkholderia graminis OAS925 0.36 ABIE53_002713 tRNA/rRNA methyltransferase 0.27 ABIE53_002532 ribosomal-protein-alanine N-acetyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS06100 RNA methyltransferase 0.27 QEN71_RS06290 ribosomal protein S18-alanine N-acetyltransferase low > 153
Variovorax sp. SCN45 0.28 GFF4680 tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200) 0.30 GFF5521 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3650 tRNA:Cm32/Um32 methyltransferase 0.29 GFF2766 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) — —
Variovorax sp. OAS795 0.28 ABID97_RS20730 RNA methyltransferase 0.29 ABID97_RS01660 ribosomal protein S18-alanine N-acetyltransferase 0.20 86
Acidovorax sp. GW101-3H11 0.27 Ac3H11_3646 tRNA:Cm32/Um32 methyltransferase 0.31 Ac3H11_667 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 79

Not shown: 20 genomes with orthologs for CSW01_03875 only; 1 genomes with orthologs for CSW01_03460 only