Conservation of cofitness between CSW01_08705 and CSW01_03410 in Vibrio cholerae E7946 ATCC 55056

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase 1.0 CSW01_03410 polyribonucleotide nucleotidyltransferase 0.66 3
Rahnella sp. WP5 0.77 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 EX31_RS08520 polyribonucleotide nucleotidyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.77 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) low > 78
Escherichia coli ECRC98 0.74 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase low > 87
Dickeya dianthicola ME23 0.74 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 DZA65_RS03255 polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECOR27 0.74 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase low > 76
Escherichia coli Nissle 1917 0.74 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase low > 55
Escherichia coli ECRC102 0.74 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECRC101 0.74 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase low > 87
Escherichia coli BW25113 0.74 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.77 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) low > 76
Dickeya dadantii 3937 0.74 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECRC99 0.74 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECRC100 0.74 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase low > 79
Escherichia coli ECRC62 0.74 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase low > 75
Klebsiella pneumoniae MKP103 0.74 KDGMDA_17970 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 KDGMDA_05875 polyribonucleotide nucleotidyltransferase low > 95
Escherichia coli BL21 0.74 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.77 ECD_03031 polynucleotide phosphorylase/polyadenylase low > 61
Dickeya dianthicola 67-19 0.74 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 HGI48_RS03260 polyribonucleotide nucleotidyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase low > 74
Enterobacter sp. TBS_079 0.74 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 MPMX20_04068 Polyribonucleotide nucleotidyltransferase — —
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS04470 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 PagCFBP13505_RS09100 polyribonucleotide nucleotidyltransferase — —
Escherichia fergusonii Becca 0.74 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 EFB2_00659 Polyribonucleotide nucleotidyltransferase low > 86
Enterobacter asburiae PDN3 0.74 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.77 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase — —
Erwinia tracheiphila SCR3 0.73 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase — —
Erwinia tracheiphila HP pepo 2.2 0.73 IJEDHG_20275 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 IJEDHG_13960 pnp polyribonucleotide nucleotidyltransferase — —
Klebsiella michiganensis M5al 0.73 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 BWI76_RS25065 polyribonucleotide nucleotidyltransferase low > 92
Escherichia coli ECOR38 0.73 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase — —
Serratia liquefaciens MT49 0.73 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 IAI46_01955 polyribonucleotide nucleotidyltransferase low > 87
Shewanella sp. ANA-3 0.73 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Pantoea sp. MT58 0.72 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase 0.78 IAI47_17005 polyribonucleotide nucleotidyltransferase — —
Shewanella oneidensis MR-1 0.72 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.72 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.72 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.73 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Erwinia amylovora T8 0.72 OLJFJH_16135 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 OLJFJH_07265 polyribonucleotide nucleotidyltransferase — —
Pectobacterium carotovorum WPP14 0.72 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 HER17_RS18190 polyribonucleotide nucleotidyltransferase — —
Shewanella loihica PV-4 0.71 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.74 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Alteromonas macleodii MIT1002 0.68 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase 0.73 MIT1002_01888 Polyribonucleotide nucleotidyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase — —
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase low > 109
Paraburkholderia graminis OAS925 0.58 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 ABIE53_001586 polyribonucleotide nucleotidyltransferase — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 QEN71_RS24175 polyribonucleotide nucleotidyltransferase — —
Ralstonia solanacearum PSI07 0.55 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RPSI07_RS14305 polyribonucleotide nucleotidyltransferase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RALBFv3_RS03005 polyribonucleotide nucleotidyltransferase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 UW163_RS10720 polyribonucleotide nucleotidyltransferase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RS_RS10375 polyribonucleotide nucleotidyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 ABZR87_RS14910 polyribonucleotide nucleotidyltransferase low > 80
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase 0.65 HSERO_RS08755 polynucleotide phosphorylase/polyadenylase — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RR42_RS05485 polynucleotide phosphorylase/polyadenylase low > 128
Methylophilus sp. DMC18 0.52 GFF731 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 GFF2832 Polyribonucleotide nucleotidyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.43 DvMF_2508 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase — —
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase 0.38 HMPREF1078_RS17715 polyribonucleotide nucleotidyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.28 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) 0.40 BT2563 polyribonucleotide nucleotidyltransferase (NCBI ptt file) — —
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 ABI39_RS04155 polyribonucleotide nucleotidyltransferase — —
Rhizobium sp. OAE497 0.28 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase 0.55 ABIE40_RS00355 polyribonucleotide nucleotidyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 HMPREF1058_RS12555 polyribonucleotide nucleotidyltransferase — —
Bacteroides ovatus ATCC 8483 0.28 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 BACOVA_01641 polyribonucleotide nucleotidyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase 0.39 Echvi_3436 polyribonucleotide nucleotidyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase 0.39 ABZR88_RS06490 polyribonucleotide nucleotidyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) 0.40 DVU0503 pnp polyribonucleotide nucleotidyltransferase (TIGR) — —
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 HMPREF1181_RS00815 polyribonucleotide nucleotidyltransferase — —
Agrobacterium fabrum C58 0.26 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase 0.55 Atu0082 polyribonucleotide nucleotidyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase low > 109
Pseudomonas orientalis W4I3 0.25 QF045_RS17005 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 QF045_RS26205 polyribonucleotide nucleotidyltransferase — —
Pseudomonas lactucae CFBP13502 0.25 GEMAOFIL_02820 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 GEMAOFIL_04941 Polyribonucleotide nucleotidyltransferase low > 96
Pseudomonas fluorescens SBW25 0.25 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase low > 109
Pseudomonas simiae WCS417 0.25 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 PS417_23950 polynucleotide phosphorylase/polyadenylase low > 88
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase 0.39 CA265_RS08985 polyribonucleotide nucleotidyltransferase — —
Cellulophaga baltica 18 0.24 M666_RS08280 3-phosphoshikimate 1-carboxyvinyltransferase 0.36 M666_RS08550 polyribonucleotide nucleotidyltransferase — —
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.68 B158DRAFT_0104 polyribonucleotide nucleotidyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 CA264_04880 polyribonucleotide nucleotidyltransferase — —
Fusobacterium nucleatum SB010 0.22 HUW76_05445 3-phosphoshikimate 1-carboxyvinyltransferase 0.45 HUW76_01280 polyribonucleotide nucleotidyltransferase — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.44 Synpcc7942_2440 pnp polynucleotide phosphorylase/polyadenylase — —
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 ABZR86_RS06005 polyribonucleotide nucleotidyltransferase — —
Lysobacter sp. OAE881 0.19 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 ABIE51_RS08415 polyribonucleotide nucleotidyltransferase — —
Synechocystis sp000284455 PCC 6803 0.18 SGL_RS11755 3-phosphoshikimate 1-carboxyvinyltransferase 0.41 SGL_RS02295 polyribonucleotide nucleotidyltransferase — —
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 OKGIIK_05870 pnp polyribonucleotide nucleotidyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.62 Xcc-8004.2006.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) — —
Rhodanobacter sp000427505 FW510-R12 0.18 LRK53_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 LRK53_RS09090 polyribonucleotide nucleotidyltransferase low > 59
Mycobacterium tuberculosis H37Rv 0.18 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) 0.39 Rv2783c Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI: guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (pnpase) — —
Rhodanobacter denitrificans MT42 0.17 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 LRK55_RS00800 polyribonucleotide nucleotidyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 LRK54_RS01025 polyribonucleotide nucleotidyltransferase — —
Sinorhizobium meliloti 1021 0.16 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase 0.55 SMc00324 polynucleotide phosphorylase/polyadenylase — —
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase 0.54 CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase — —
Caulobacter crescentus NA1000 0.16 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase 0.54 CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase — —
Rhodopseudomonas palustris CGA009 0.16 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase 0.53 TX73_002245 polyribonucleotide nucleotidyltransferase — —
Magnetospirillum magneticum AMB-1 0.16 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase 0.56 AMB_RS20820 polyribonucleotide nucleotidyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.16 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase 0.53 A4249_RS13355 polyribonucleotide nucleotidyltransferase — —
Bosea sp. OAE506 0.15 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase 0.54 ABIE41_RS04595 polyribonucleotide nucleotidyltransferase — —
Xanthobacter sp. DMC5 0.15 GFF4571 3-phosphoshikimate 1-carboxyvinyltransferase 0.54 GFF2302 Polyribonucleotide nucleotidyltransferase — —
Sphingobium sp. HT1-2 0.15 GFF1645 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.53 GFF2343 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) — —
Dinoroseobacter shibae DFL-12 0.14 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.53 Dshi_2997 Polyribonucleotide nucleotidyltransferase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.14 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA 0.52 PGA1_c33000 polyribonucleotide nucleotidyltransferase Pnp — —
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.54 Ga0059261_2140 polyribonucleotide nucleotidyltransferase — —
Azospirillum sp. SherDot2 0.14 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase 0.54 MPMX19_02526 Polyribonucleotide nucleotidyltransferase — —
Rhodospirillum rubrum S1H 0.14 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.55 Rru_A3785 3' exoribonuclease (NCBI) — —
Azospirillum brasilense Sp245 0.13 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase 0.55 AZOBR_RS01385 polynucleotide phosphorylase — —

Not shown: 3 genomes with orthologs for CSW01_08705 only; 25 genomes with orthologs for CSW01_03410 only