Conservation of cofitness between CSW01_08705 and CSW01_03410 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase 1.0 CSW01_03410 polyribonucleotide nucleotidyltransferase 0.66 3
Rahnella sp. WP5 0.77 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 EX31_RS08520 polyribonucleotide nucleotidyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.77 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) low > 78
Escherichia coli Nissle 1917 0.74 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase low > 55
Escherichia coli ECRC102 0.74 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECRC98 0.74 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase low > 87
Escherichia coli ECRC101 0.74 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase low > 87
Dickeya dianthicola ME23 0.74 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 DZA65_RS03255 polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECRC100 0.74 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase low > 79
Dickeya dadantii 3937 0.74 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase — —
Klebsiella pneumoniae MKP103 0.74 KDGMDA_17970 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 KDGMDA_05875 polyribonucleotide nucleotidyltransferase low > 94
Escherichia coli ECOR27 0.74 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase low > 75
Escherichia coli ECRC62 0.74 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase low > 75
Escherichia coli BW25113 0.74 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.77 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) low > 76
Klebsiella pneumoniae MRSN742743 0.74 KFA93_RS00915 aroA;go_function=3-phosphoshikimate 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 KFA93_RS13135 pnp;go_function=RNA polyribonucleotide nucleotidyltransferase low > 82
Escherichia coli ECRC99 0.74 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase — —
Dickeya dianthicola 67-19 0.74 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 HGI48_RS03260 polyribonucleotide nucleotidyltransferase — —
Escherichia coli BL21 0.74 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.77 ECD_03031 polynucleotide phosphorylase/polyadenylase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase low > 74
Escherichia fergusonii Becca 0.74 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 EFB2_00659 Polyribonucleotide nucleotidyltransferase low > 86
Enterobacter asburiae PDN3 0.74 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.77 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase — —
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS04470 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 PagCFBP13505_RS09100 polyribonucleotide nucleotidyltransferase — —
Enterobacter sp. TBS_079 0.74 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 MPMX20_04068 Polyribonucleotide nucleotidyltransferase — —
Klebsiella michiganensis M5al 0.73 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 BWI76_RS25065 polyribonucleotide nucleotidyltransferase low > 92
Erwinia tracheiphila HP pepo 2.2 0.73 IJEDHG_20275 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 IJEDHG_13960 pnp polyribonucleotide nucleotidyltransferase — —
Erwinia tracheiphila SCR3 0.73 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECOR38 0.73 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.77 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase — —
Serratia liquefaciens MT49 0.73 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 IAI46_01955 polyribonucleotide nucleotidyltransferase low > 87
Shewanella sp. ANA-3 0.73 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Shewanella oneidensis MR-1 0.72 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.72 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) — —
Pantoea sp. MT58 0.72 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase 0.78 IAI47_17005 polyribonucleotide nucleotidyltransferase — —
Shewanella amazonensis SB2B 0.72 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.73 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Erwinia amylovora T8 0.72 OLJFJH_16135 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 OLJFJH_07265 polyribonucleotide nucleotidyltransferase — —
Pectobacterium carotovorum WPP14 0.72 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 HER17_RS18190 polyribonucleotide nucleotidyltransferase — —
Shewanella loihica PV-4 0.71 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.74 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Alteromonas macleodii MIT1002 0.68 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase 0.73 MIT1002_01888 Polyribonucleotide nucleotidyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase — —
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase low > 109
Paraburkholderia graminis OAS925 0.58 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase 0.63 ABIE53_001586 polyribonucleotide nucleotidyltransferase — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 QEN71_RS24175 polyribonucleotide nucleotidyltransferase — —
Ralstonia solanacearum PSI07 0.55 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RPSI07_RS14305 polyribonucleotide nucleotidyltransferase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RALBFv3_RS03005 polyribonucleotide nucleotidyltransferase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 UW163_RS10720 polyribonucleotide nucleotidyltransferase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RS_RS10375 polyribonucleotide nucleotidyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 ABZR87_RS14910 polyribonucleotide nucleotidyltransferase low > 80
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase 0.65 HSERO_RS08755 polynucleotide phosphorylase/polyadenylase — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 RR42_RS05485 polynucleotide phosphorylase/polyadenylase low > 128
Methylophilus sp. DMC18 0.52 GFF731 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 GFF2832 Polyribonucleotide nucleotidyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.43 DvMF_2508 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase — —
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase 0.38 HMPREF1078_RS17715 polyribonucleotide nucleotidyltransferase — —
Rhizobium sp. OAE497 0.28 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase 0.55 ABIE40_RS00355 polyribonucleotide nucleotidyltransferase — —
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 ABI39_RS04155 polyribonucleotide nucleotidyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.28 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) 0.40 BT2563 polyribonucleotide nucleotidyltransferase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 HMPREF1058_RS12555 polyribonucleotide nucleotidyltransferase — —
Bacteroides ovatus ATCC 8483 0.28 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 BACOVA_01641 polyribonucleotide nucleotidyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase 0.39 Echvi_3436 polyribonucleotide nucleotidyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase 0.39 ABZR88_RS06490 polyribonucleotide nucleotidyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) 0.40 DVU0503 pnp polyribonucleotide nucleotidyltransferase (TIGR) — —
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase 0.40 HMPREF1181_RS00815 polyribonucleotide nucleotidyltransferase — —
Agrobacterium fabrum C58 0.26 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase 0.55 Atu0082 polyribonucleotide nucleotidyltransferase — —
Pseudomonas fluorescens SBW25 0.25 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase low > 109
Pseudomonas orientalis W4I3 0.25 QF045_RS17005 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 QF045_RS26205 polyribonucleotide nucleotidyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase low > 109
Pseudomonas lactucae CFBP13502 0.25 GEMAOFIL_02820 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 GEMAOFIL_04941 Polyribonucleotide nucleotidyltransferase low > 96

Not shown: 2 genomes with orthologs for CSW01_08705 only; 56 genomes with orthologs for CSW01_03410 only