Conservation of cofitness between CSW01_14090 and CSW01_03175 in Vibrio cholerae E7946 ATCC 55056

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14090 NAD(P)-dependent oxidoreductase 1.0 CSW01_03175 penicillin-binding protein 1B 0.61 20
Shewanella loihica PV-4 0.54 Shew_1609 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) 0.43 Shew_3123 penicillin-binding protein 1B (RefSeq) low > 60
Marinobacter adhaerens HP15 0.51 HP15_1515 6-phosphogluconate dehydrogenase domain protein 0.36 HP15_338 penicillin-binding protein 1B low > 73
Shewanella sp. ANA-3 0.51 Shewana3_2554 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) 0.43 Shewana3_0623 penicillin-binding protein 1B (RefSeq) low > 73
Shewanella amazonensis SB2B 0.50 Sama_1975 2-hydroxy-3-oxopropionate reductase (RefSeq) 0.43 Sama_2971 peptidoglycan glycosyltransferase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.50 MIT1002_01976 2-hydroxy-3-oxopropionate reductase 0.41 MIT1002_00409 Murein polymerase low > 70
Pseudomonas sp. S08-1 0.50 OH686_02015 2-hydroxy-3-oxopropionate reductase 0.37 OH686_08150 penicillin-binding protein 1B low > 80
Shewanella oneidensis MR-1 0.50 SO2771 garR 2-hydroxy-3-oxopropionate reductase (NCBI ptt file) 0.43 SO0633 mrcB penicillin-binding protein 1B (NCBI ptt file) low > 76
Pseudomonas segetis P6 0.49 MPMX49_02338 2-hydroxy-3-oxopropionate reductase 0.37 MPMX49_01270 Penicillin-binding protein 1B low > 75
Pseudomonas aeruginosa PA14 0.49 IKLFDK_07540 oxidoreductase 0.39 IKLFDK_30125 penicillin-binding protein 1B low > 98
Pseudomonas aeruginosa MRSN321 0.49 DY961_RS19525 NAD(P)-dependent oxidoreductase 0.39 DY961_RS09235 mrcB;go_component=peptidoglycan-based penicillin-binding protein 1B low > 100
Pseudomonas aeruginosa PUPa3 0.48 DQ20_RS53640 NAD(P)-dependent oxidoreductase 0.39 DQ20_RS52795 mrcB;go_component=peptidoglycan-based penicillin-binding protein 1B low > 101
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS15600 NAD(P)-dependent oxidoreductase 0.31 ABZR86_RS19740 penicillin-binding protein 1B low > 74
Lysobacter sp. OAE881 0.32 ABIE51_RS00115 NAD(P)-dependent oxidoreductase 0.28 ABIE51_RS05185 penicillin-binding protein 1B — —
Escherichia coli ECRC62 0.31 BNILDI_01380 garR 2-hydroxy-3-oxopropionate reductase 0.45 BNILDI_09000 mrcB bifunctional glycosyl transferase/transpeptidase low > 75
Escherichia coli BW25113 0.31 b3125 garR tartronate semialdehyde reductase (RefSeq) 0.45 b0149 mrcB penicillin-binding protein 1b (NCBI) low > 76
Escherichia coli ECRC98 0.31 JDDGAC_22000 garR 2-hydroxy-3-oxopropionate reductase 0.45 JDDGAC_13920 mrcB bifunctional glycosyl transferase/transpeptidase low > 87
Escherichia coli ECRC102 0.31 NIAGMN_16130 garR 2-hydroxy-3-oxopropionate reductase 0.45 NIAGMN_08175 mrcB bifunctional glycosyl transferase/transpeptidase low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_00578 2-hydroxy-3-oxopropionate reductase 0.45 OHPLBJKB_03513 Penicillin-binding protein 1B low > 74
Escherichia coli ECOR38 0.31 HEPCGN_17205 garR 2-hydroxy-3-oxopropionate reductase 0.45 HEPCGN_08275 mrcB bifunctional glycosyl transferase/transpeptidase low > 88
Escherichia coli ECRC99 0.31 KEDOAH_09780 garR 2-hydroxy-3-oxopropionate reductase 0.45 KEDOAH_17830 mrcB bifunctional glycosyl transferase/transpeptidase — —
Escherichia coli Nissle 1917 0.31 ECOLIN_RS17960 2-hydroxy-3-oxopropionate reductase 0.45 ECOLIN_RS00835 bifunctional glycosyl transferase/transpeptidase low > 55
Escherichia coli ECRC101 0.31 MCAODC_08880 garR 2-hydroxy-3-oxopropionate reductase 0.45 MCAODC_00840 mrcB bifunctional glycosyl transferase/transpeptidase low > 87
Escherichia coli BL21 0.31 ECD_02990 tartronate semialdehyde reductase 0.45 ECD_00148 fused glycosyl transferase and transpeptidase low > 61
Escherichia coli ECOR27 0.31 NOLOHH_10150 garR 2-hydroxy-3-oxopropionate reductase 0.45 NOLOHH_02670 mrcB bifunctional glycosyl transferase/transpeptidase low > 76
Escherichia coli ECRC100 0.31 OKFHMN_18370 garR 2-hydroxy-3-oxopropionate reductase 0.45 OKFHMN_10325 mrcB bifunctional glycosyl transferase/transpeptidase low > 79
Rahnella sp. WP5 0.30 EX31_RS07980 2-hydroxy-3-oxopropionate reductase 0.45 EX31_RS03230 bifunctional glycosyl transferase/transpeptidase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF1536 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) 0.45 GFF83 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 78
Klebsiella pneumoniae MKP103 0.30 KDGMDA_05690 2-hydroxy-3-oxopropionate reductase 0.45 KDGMDA_13365 bifunctional glycosyl transferase/transpeptidase low > 95
Escherichia fergusonii Becca 0.29 EFB2_00694 2-hydroxy-3-oxopropionate reductase 0.45 EFB2_03895 Penicillin-binding protein 1B 0.39 16
Klebsiella michiganensis M5al 0.29 BWI76_RS24825 2-hydroxy-3-oxopropionate reductase 0.45 BWI76_RS05120 bifunctional glycosyl transferase/transpeptidase low > 92
Dickeya dadantii 3937 0.29 DDA3937_RS17035 2-hydroxy-3-oxopropionate reductase 0.48 DDA3937_RS15915 bifunctional glycosyl transferase/transpeptidase low > 74
Dickeya dianthicola ME23 0.28 DZA65_RS18165 2-hydroxy-3-oxopropionate reductase 0.48 DZA65_RS17115 bifunctional glycosyl transferase/transpeptidase low > 75
Pantoea sp. MT58 0.28 IAI47_04100 2-hydroxy-3-oxopropionate reductase 0.46 IAI47_15615 bifunctional glycosyl transferase/transpeptidase low > 76
Enterobacter asburiae PDN3 0.28 EX28DRAFT_3182 2-hydroxy-3-oxopropionate reductase 0.45 EX28DRAFT_3738 penicillin-binding protein 1B low > 76
Erwinia tracheiphila SCR3 0.28 LU632_RS06330 garR 2-hydroxy-3-oxopropionate reductase 0.46 LU632_RS20060 mrcB bifunctional glycosyl transferase/transpeptidase low > 73
Enterobacter sp. TBS_079 0.28 MPMX20_04033 2-hydroxy-3-oxopropionate reductase 0.45 MPMX20_00835 Penicillin-binding protein 1B low > 85
Pantoea agglomerans CFBP13505 P0401 0.28 PagCFBP13505_RS16870 2-hydroxy-3-oxopropionate reductase 0.46 PagCFBP13505_RS13390 bifunctional glycosyl transferase/transpeptidase low > 74
Erwinia tracheiphila HP pepo 2.2 0.28 IJEDHG_17355 garR 2-hydroxy-3-oxopropionate reductase 0.46 IJEDHG_15080 Penicillin-binding protein 1B low > 61
Dickeya dianthicola 67-19 0.28 HGI48_RS17090 2-hydroxy-3-oxopropionate reductase 0.48 HGI48_RS16030 bifunctional glycosyl transferase/transpeptidase low > 71
Pseudomonas orientalis W4I3 0.26 QF045_RS11500 2-hydroxy-3-oxopropionate reductase 0.38 QF045_RS26085 penicillin-binding protein 1B low > 93
Pectobacterium carotovorum WPP14 0.26 HER17_RS04095 2-hydroxy-3-oxopropionate reductase 0.48 HER17_RS05600 bifunctional glycosyl transferase/transpeptidase low > 75
Pseudomonas simiae WCS417 0.26 PS417_08800 tartronate semialdehyde reductase 0.38 PS417_23825 penicillin-binding protein — —
Pseudomonas stutzeri RCH2 0.25 Psest_1179 2-hydroxy-3-oxopropionate reductase 0.38 Psest_1032 penicillin-binding protein 1B — —
Pseudomonas fluorescens SBW25 0.25 PFLU_RS08860 2-hydroxy-3-oxopropionate reductase 0.38 PFLU_RS25665 penicillin-binding protein 1B — —
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS08860 2-hydroxy-3-oxopropionate reductase 0.38 PFLU_RS25665 penicillin-binding protein 1B low > 109
Pseudomonas lactucae CFBP13502 0.25 GEMAOFIL_01891 2-hydroxy-3-oxopropionate reductase 0.38 GEMAOFIL_04916 Penicillin-binding protein 1B low > 96
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_19610 2-hydroxy-3-oxopropionate reductase 0.38 AO356_16150 penicillin-binding protein 1B low > 104
Pseudomonas sp. DMC3 0.25 GFF2501 2-hydroxy-3-oxopropionate reductase 0.38 GFF4046 Penicillin-binding protein 1B low > 89
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_4297 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) 0.37 PfGW456L13_1535 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas sp. BP01 0.25 JOY50_RS00360 2-hydroxy-3-oxopropionate reductase 0.38 JOY50_RS27745 mrcB penicillin-binding protein 1B low > 84
Pseudomonas putida KT2440 0.25 PP_4299 tartronate semialdehyde reductase 0.38 PP_4683 transglycosylase/transpeptidase — —
Pseudomonas sp. RS175 0.25 PFR28_03112 2-hydroxy-3-oxopropionate reductase 0.38 PFR28_03703 Penicillin-binding protein 1B — —
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_5837 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) 0.37 Pf6N2E2_5171 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) — —
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_01930 2-hydroxy-3-oxopropionate reductase 0.38 AO353_14475 penicillin-binding protein 1B low > 101
Pseudomonas sp. SVBP6 0.23 COO64_RS25875 2-hydroxy-3-oxopropionate reductase 0.38 COO64_RS15020 mrcB penicillin-binding protein 1B low > 93
Acinetobacter radioresistens SK82 0.23 MPMX26_01549 3-hydroxyisobutyrate dehydrogenase 0.31 MPMX26_02029 Penicillin-binding protein 1B — —
Acinetobacter baumannii LAC-4 0.23 RR41_RS18340 3-hydroxyisobutyrate dehydrogenase 0.31 RR41_RS06175 penicillin-binding protein 1B low > 55
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_3659 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) 0.38 Pf1N1B4_2874 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) — —
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.3685.1 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) 0.28 Xcc-8004.1494.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 74
Pseudomonas syringae pv. syringae B728a 0.20 Psyr_0690 3-hydroxyisobutyrate dehydrogenase 0.37 Psyr_0842 Peptidoglycan glycosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.20 Psyr_0690 3-hydroxyisobutyrate dehydrogenase 0.37 Psyr_0842 Peptidoglycan glycosyltransferase low > 86
Serratia liquefaciens MT49 0.17 IAI46_07605 NAD(P)-dependent oxidoreductase 0.49 IAI46_21190 bifunctional glycosyl transferase/transpeptidase low > 87
Rhodanobacter denitrificans MT42 0.16 LRK55_RS14400 NAD(P)-dependent oxidoreductase 0.32 LRK55_RS12445 penicillin-binding protein 1B low > 63
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS14685 NAD(P)-dependent oxidoreductase 0.32 LRK54_RS12740 penicillin-binding protein 1B low > 59
Rhodanobacter sp000427505 FW510-R12 0.16 LRK53_RS13910 NAD(P)-dependent oxidoreductase 0.31 LRK53_RS15845 penicillin-binding protein 1B low > 59
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_03510 mmsB 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase 0.31 OKGIIK_02185 Penicillin-binding protein 1B low > 53
Erwinia amylovora T8 0.13 OLJFJH_17300 3-hydroxyisobutyrate dehydrogenase 0.45 OLJFJH_00745 bifunctional glycosyl transferase/transpeptidase low > 58

Not shown: 39 genomes with orthologs for CSW01_14090 only; 1 genomes with orthologs for CSW01_03175 only