Conservation of cofitness between CSW01_05805 and CSW01_03175 in Vibrio cholerae E7946 ATCC 55056

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA 1.0 CSW01_03175 penicillin-binding protein 1B 0.48 8
Dickeya dianthicola 67-19 0.79 HGI48_RS09575 ATP-dependent Clp protease ATP-binding subunit ClpA 0.48 HGI48_RS16030 bifunctional glycosyl transferase/transpeptidase low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS09560 ATP-dependent Clp protease ATP-binding subunit ClpA 0.48 DDA3937_RS15915 bifunctional glycosyl transferase/transpeptidase low > 74
Klebsiella pneumoniae MKP103 0.79 KDGMDA_17860 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 KDGMDA_13365 bifunctional glycosyl transferase/transpeptidase 0.47 6
Dickeya dianthicola ME23 0.79 DZA65_RS09885 ATP-dependent Clp protease ATP-binding subunit ClpA 0.48 DZA65_RS17115 bifunctional glycosyl transferase/transpeptidase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF4901 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 GFF83 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 78
Erwinia amylovora T8 0.79 OLJFJH_16215 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 OLJFJH_00745 bifunctional glycosyl transferase/transpeptidase low > 58
Escherichia coli Nissle 1917 0.79 ECOLIN_RS04695 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 ECOLIN_RS00835 bifunctional glycosyl transferase/transpeptidase low > 55
Escherichia coli ECRC62 0.79 BNILDI_20435 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 BNILDI_09000 mrcB bifunctional glycosyl transferase/transpeptidase low > 75
Escherichia coli ECRC99 0.79 KEDOAH_22125 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 KEDOAH_17830 mrcB bifunctional glycosyl transferase/transpeptidase — —
Escherichia coli ECOR38 0.79 HEPCGN_22900 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 HEPCGN_08275 mrcB bifunctional glycosyl transferase/transpeptidase low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_02786 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 OHPLBJKB_03513 Penicillin-binding protein 1B low > 74
Escherichia coli ECRC102 0.79 NIAGMN_03825 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 NIAGMN_08175 mrcB bifunctional glycosyl transferase/transpeptidase 0.72 46
Escherichia coli ECRC98 0.79 JDDGAC_09420 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 JDDGAC_13920 mrcB bifunctional glycosyl transferase/transpeptidase low > 87
Escherichia coli ECRC100 0.79 OKFHMN_05785 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 OKFHMN_10325 mrcB bifunctional glycosyl transferase/transpeptidase low > 79
Escherichia coli ECRC101 0.79 MCAODC_25000 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 MCAODC_00840 mrcB bifunctional glycosyl transferase/transpeptidase low > 87
Escherichia coli BW25113 0.79 b0882 clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) 0.45 b0149 mrcB penicillin-binding protein 1b (NCBI) low > 76
Escherichia fergusonii Becca 0.79 EFB2_03179 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 EFB2_03895 Penicillin-binding protein 1B low > 86
Enterobacter sp. TBS_079 0.79 MPMX20_01544 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 MPMX20_00835 Penicillin-binding protein 1B low > 85
Escherichia coli ECOR27 0.79 NOLOHH_22180 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 NOLOHH_02670 mrcB bifunctional glycosyl transferase/transpeptidase low > 76
Klebsiella michiganensis M5al 0.78 BWI76_RS09615 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 BWI76_RS05120 bifunctional glycosyl transferase/transpeptidase low > 92
Pectobacterium carotovorum WPP14 0.78 HER17_RS12400 ATP-dependent Clp protease ATP-binding subunit ClpA 0.48 HER17_RS05600 bifunctional glycosyl transferase/transpeptidase low > 75
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2050 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.45 EX28DRAFT_3738 penicillin-binding protein 1B low > 76
Rahnella sp. WP5 0.78 EX31_RS18560 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 EX31_RS03230 bifunctional glycosyl transferase/transpeptidase low > 89
Escherichia coli BL21 0.78 ECD_00887 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity 0.45 ECD_00148 fused glycosyl transferase and transpeptidase low > 61
Serratia liquefaciens MT49 0.78 IAI46_08515 ATP-dependent Clp protease ATP-binding subunit ClpA 0.49 IAI46_21190 bifunctional glycosyl transferase/transpeptidase low > 87
Pantoea sp. MT58 0.78 IAI47_12945 ATP-dependent Clp protease ATP-binding subunit ClpA 0.46 IAI47_15615 bifunctional glycosyl transferase/transpeptidase low > 76
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13505_RS04385 ATP-dependent Clp protease ATP-binding subunit ClpA 0.46 PagCFBP13505_RS13390 bifunctional glycosyl transferase/transpeptidase low > 74
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_20185 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.46 IJEDHG_15080 Penicillin-binding protein 1B low > 61
Erwinia tracheiphila SCR3 0.76 LU632_RS09705 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.46 LU632_RS20060 mrcB bifunctional glycosyl transferase/transpeptidase low > 73
Alteromonas macleodii MIT1002 0.73 MIT1002_01834 ATP-dependent Clp protease ATP-binding subunit ClpA 0.41 MIT1002_00409 Murein polymerase low > 70
Shewanella amazonensis SB2B 0.72 Sama_2056 ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) 0.43 Sama_2971 peptidoglycan glycosyltransferase (RefSeq) low > 62
Shewanella sp. ANA-3 0.71 Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) 0.43 Shewana3_0623 penicillin-binding protein 1B (RefSeq) low > 73
Shewanella oneidensis MR-1 0.71 SO2626 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) 0.43 SO0633 mrcB penicillin-binding protein 1B (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.70 Shew_1566 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) 0.43 Shew_3123 penicillin-binding protein 1B (RefSeq) low > 60
Marinobacter adhaerens HP15 0.68 HP15_2080 ATP-dependent Clp protease ATP-binding subunit ClpA 0.36 HP15_338 penicillin-binding protein 1B low > 73
Pseudomonas simiae WCS417 0.67 PS417_16510 Clp protease ClpX 0.38 PS417_23825 penicillin-binding protein low > 88
Pseudomonas sp. DMC3 0.67 GFF1525 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 GFF4046 Penicillin-binding protein 1B low > 89
Pseudomonas sp. RS175 0.67 PFR28_02613 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 PFR28_03703 Penicillin-binding protein 1B low > 88
Pseudomonas orientalis W4I3 0.67 QF045_RS18265 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 QF045_RS26085 penicillin-binding protein 1B low > 93
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_1505 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.33 B158DRAFT_0038 penicillin-binding protein 1B low > 40
Pseudomonas sp. BP01 0.66 JOY50_RS06555 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 JOY50_RS27745 mrcB penicillin-binding protein 1B low > 84
Pseudomonas segetis P6 0.66 MPMX49_02541 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 MPMX49_01270 Penicillin-binding protein 1B low > 75
Pseudomonas putida KT2440 0.66 PP_4008 ATP-dependent serine protease 0.38 PP_4683 transglycosylase/transpeptidase low > 96
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 PFLU_RS25665 penicillin-binding protein 1B low > 109
Pseudomonas fluorescens SBW25 0.66 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 PFLU_RS25665 penicillin-binding protein 1B low > 109
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_4055 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 Pf1N1B4_2874 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 Psyr_0842 Peptidoglycan glycosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 Psyr_0842 Peptidoglycan glycosyltransferase low > 86
Pseudomonas aeruginosa PUPa3 0.66 DQ20_RS35145 clpA;go_component=endopeptidase ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 DQ20_RS52795 mrcB;go_component=peptidoglycan-based penicillin-binding protein 1B low > 101
Pseudomonas aeruginosa MRSN321 0.66 DY961_RS04120 clpA;go_component=endopeptidase ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 DY961_RS09235 mrcB;go_component=peptidoglycan-based penicillin-binding protein 1B low > 100
Pseudomonas aeruginosa PA14 0.66 IKLFDK_13150 ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 IKLFDK_30125 penicillin-binding protein 1B low > 98
Pseudomonas sp. SVBP6 0.66 COO64_RS24200 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 COO64_RS15020 mrcB penicillin-binding protein 1B low > 93
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_2646 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 PfGW456L13_1535 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas sp. S08-1 0.66 OH686_00235 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 OH686_08150 penicillin-binding protein 1B low > 80
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_27675 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 AO353_14475 penicillin-binding protein 1B low > 101
Pseudomonas lactucae CFBP13502 0.66 GEMAOFIL_03629 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 GEMAOFIL_04916 Penicillin-binding protein 1B low > 96
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_22150 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 AO356_16150 penicillin-binding protein 1B low > 104
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_292 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 Pf6N2E2_5171 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 103
Pseudomonas stutzeri RCH2 0.66 Psest_2027 ATP-dependent Clp protease ATP-binding subunit clpA 0.38 Psest_1032 penicillin-binding protein 1B — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS02200 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 ABZR86_RS19740 penicillin-binding protein 1B low > 74
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS00420 ATP-dependent Clp protease ATP-binding subunit ClpA 0.32 LRK54_RS12740 penicillin-binding protein 1B low > 59
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_06890 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 OKGIIK_02185 Penicillin-binding protein 1B low > 53
Rhodanobacter denitrificans MT42 0.64 LRK55_RS00160 ATP-dependent Clp protease ATP-binding subunit ClpA 0.32 LRK55_RS12445 penicillin-binding protein 1B low > 63
Rhodanobacter sp000427505 FW510-R12 0.64 LRK53_RS09730 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 LRK53_RS15845 penicillin-binding protein 1B low > 59
Lysobacter sp. OAE881 0.63 ABIE51_RS11490 ATP-dependent Clp protease ATP-binding subunit ClpA 0.28 ABIE51_RS05185 penicillin-binding protein 1B low > 62
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2754.1 ATP-dependent Clp protease ATP-binding subunit ClpA 0.28 Xcc-8004.1494.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 74
Acinetobacter baumannii LAC-4 0.59 RR41_RS13895 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 RR41_RS06175 penicillin-binding protein 1B low > 55
Acinetobacter radioresistens SK82 0.59 MPMX26_01284 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 MPMX26_02029 Penicillin-binding protein 1B low > 36

Not shown: 38 genomes with orthologs for CSW01_05805 only; 0 genomes with orthologs for CSW01_03175 only