Conservation of cofitness between CSW01_09465 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09465 NAD(P)/FAD-dependent oxidoreductase 1.0 CSW01_01485 transcriptional regulator 0.82 20
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3392 NADH dehydrogenase (EC 1.6.99.3) 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor low > 78
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1821 NADH dehydrogenase, FAD-containing subunit 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_01790 NADH dehydrogenase 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Escherichia coli ECOR38 0.73 HEPCGN_23990 ndh NADH-quinone dehydrogenase 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 88
Escherichia coli ECRC62 0.73 BNILDI_19185 ndh NADH-quinone dehydrogenase 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia fergusonii Becca 0.73 EFB2_02866 NADH dehydrogenase 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli Nissle 1917 0.73 ECOLIN_RS06400 NADH-quinone dehydrogenase 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02557 NADH dehydrogenase 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 74
Escherichia coli ECOR27 0.73 NOLOHH_21020 ndh NADH-quinone dehydrogenase 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 76
Escherichia coli BW25113 0.73 b1109 ndh respiratory NADH dehydrogenase 2/cupric reductase (NCBI) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli BL21 0.73 ECD_01105 respiratory NADH dehydrogenase 2/cupric reductase 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Escherichia coli ECRC100 0.72 OKFHMN_03495 ndh NADH-quinone dehydrogenase 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 79
Escherichia coli ECRC99 0.72 KEDOAH_24260 ndh NADH-quinone dehydrogenase 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC102 0.72 NIAGMN_24335 ndh NADH-quinone dehydrogenase 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECRC98 0.72 JDDGAC_07155 ndh NADH-quinone dehydrogenase 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC101 0.72 MCAODC_22855 ndh NADH-quinone dehydrogenase 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Serratia liquefaciens MT49 0.72 IAI46_09910 NAD(P)/FAD-dependent oxidoreductase 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR low > 87
Klebsiella pneumoniae MKP103 0.72 KDGMDA_18770 Type II NADH:quinone oxidoreductase 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR low > 95
Klebsiella michiganensis M5al 0.72 BWI76_RS11175 NADH dehydrogenase 0.51 BWI76_RS26245 transcriptional regulator — —
Rahnella sp. WP5 0.72 EX31_RS24510 NAD(P)/FAD-dependent oxidoreductase 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Pantoea sp. MT58 0.71 IAI47_11985 NAD(P)/FAD-dependent oxidoreductase 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Erwinia tracheiphila SCR3 0.71 LU632_RS14740 NAD(P)/FAD-dependent oxidoreductase 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR low > 73
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_00570 NADH dehydrogenase 0.54 IJEDHG_08040 gntR gluconate operon transcriptional repressor GntR low > 61
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS05350 NAD(P)/FAD-dependent oxidoreductase 0.50 PagCFBP13505_RS18155 gluconate operon transcriptional repressor GntR low > 74
Dickeya dadantii 3937 0.71 DDA3937_RS13040 NAD(P)/FAD-dependent oxidoreductase 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS13105 NAD(P)/FAD-dependent oxidoreductase 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Erwinia amylovora T8 0.70 OLJFJH_15455 FAD-dependent oxidoreductase 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR — —
Pectobacterium carotovorum WPP14 0.70 HER17_RS08735 NAD(P)/FAD-dependent oxidoreductase 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Dickeya dianthicola ME23 0.69 DZA65_RS13575 NAD(P)/FAD-dependent oxidoreductase 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Pseudomonas segetis P6 0.56 MPMX49_03913 NADH dehydrogenase 0.33 MPMX49_02373 HTH-type transcriptional regulator GntR low > 75
Pseudomonas aeruginosa PUPa3 0.54 DQ20_RS56240 NAD(P)/FAD-dependent oxidoreductase 0.36 DQ20_RS59230 gntR;inference=COORDINATES LacI family DNA-binding transcriptional regulator GntR low > 101
Pseudomonas aeruginosa MRSN321 0.54 DY961_RS23775 NAD(P)/FAD-dependent oxidoreductase 0.36 DY961_RS17990 gntR;inference=COORDINATES LacI family DNA-binding transcriptional regulator GntR low > 100
Pseudomonas aeruginosa PA14 0.54 IKLFDK_01385 FAD-dependent oxidoreductase 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR low > 98
Pseudomonas putida KT2440 0.54 PP_0626 NADH dehydrogenase 0.31 PP_3415 Transcriptional regulator, LacI family low > 96
Pseudomonas stutzeri RCH2 0.54 Psest_0715 NADH dehydrogenase, FAD-containing subunit 0.34 Psest_2126 Transcriptional regulators low > 67
Pseudomonas sp. BP01 0.54 JOY50_RS27170 NAD(P)/FAD-dependent oxidoreductase 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator low > 84
Pseudomonas sp. RS175 0.54 PFR28_03740 NADH dehydrogenase 0.34 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Pseudomonas sp. SVBP6 0.54 COO64_RS11095 NAD(P)/FAD-dependent oxidoreductase 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_15965 NADH dehydrogenase 0.34 AO356_05065 LacI family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_5132 NADH dehydrogenase (EC 1.6.99.3) 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas sp. DMC3 0.53 GFF4008 NADH dehydrogenase 0.33 GFF5268 HTH-type transcriptional regulator GntR 0.49 83
Alteromonas macleodii MIT1002 0.53 MIT1002_03885 NADH dehydrogenase 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor low > 70
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.53 PS417_03855 NADH dehydrogenase 0.33 PS417_21990 LacI family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.53 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2826 NADH dehydrogenase (EC 1.6.99.3) 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_1496 NADH dehydrogenase (EC 1.6.99.3) 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_0790 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_0790 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_00976 NADH dehydrogenase 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR low > 96
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_14255 NADH dehydrogenase 0.33 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas orientalis W4I3 0.52 QF045_RS06840 NAD(P)/FAD-dependent oxidoreductase 0.34 QF045_RS24095 LacI family DNA-binding transcriptional regulator low > 93
Variovorax sp. OAS795 0.48 ABID97_RS26565 NAD(P)/FAD-dependent oxidoreductase 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS26100 pyridine nucleotide-disulfide oxidoreductase 0.26 RR42_RS22645 GntR family transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS15675 NAD(P)/FAD-dependent oxidoreductase 0.26 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator low > 80
Ralstonia solanacearum UW163 0.42 UW163_RS09925 NAD(P)/FAD-dependent oxidoreductase 0.24 UW163_RS16860 GntR family transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS03745 NAD(P)/FAD-dependent oxidoreductase 0.24 RALBFv3_RS16125 GntR family transcriptional regulator low > 76
Ralstonia solanacearum GMI1000 0.42 RS_RS11190 NAD(P)/FAD-dependent oxidoreductase 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.42 RPSI07_RS13485 NAD(P)/FAD-dependent oxidoreductase 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator low > 81
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06021 NADH dehydrogenase 0.30 H281DRAFT_05920 transcriptional regulator, LacI family low > 103
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS33605 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.32 BPHYT_RS00410 LacI family transcription regulator low > 109
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS17890 NAD(P)/FAD-dependent oxidoreductase 0.29 QEN71_RS13585 LacI family DNA-binding transcriptional regulator low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4021 NADH dehydrogenase (EC 1.6.99.3) 0.30 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor low > 90
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS08760 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.34 HSERO_RS05460 LacI family transcription regulator low > 78
Rhizobium sp. OAE497 0.17 ABIE40_RS11380 NAD(P)/FAD-dependent oxidoreductase 0.25 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator low > 107
Sinorhizobium meliloti 1021 0.16 SMc04452 NADH dehydrogenase transmembrane protein 0.29 SM_b20667 LacI family transcriptional regulator low > 103
Variovorax sp. SCN45 0.16 GFF6814 NADH dehydrogenase (EC 1.6.99.3) 0.30 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor low > 127
Acidovorax sp. GW101-3H11 0.16 Ac3H11_2167 NADH dehydrogenase (EC 1.6.99.3) 0.29 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor low > 79
Azospirillum brasilense Sp245 0.15 AZOBR_RS00545 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.31 AZOBR_RS15720 LacI family transcription regulator — —
Agrobacterium fabrum C58 0.15 Atu2023 NADH dehydrogenase 0.28 Atu4685 LacI family transcriptional regulator low > 89

Not shown: 30 genomes with orthologs for CSW01_09465 only; 5 genomes with orthologs for CSW01_01485 only