Conservation of cofitness between BPHYT_RS00410 and BPHYT_RS16735 in Burkholderia phytofirmans PsJN

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS00410 LacI family transcription regulator 1.0 BPHYT_RS16735 phosphogluconate dehydratase 0.24 5
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS05460 LacI family transcription regulator 0.60 HSERO_RS05520 phosphogluconate dehydratase — —
Pseudomonas stutzeri RCH2 0.45 Psest_2126 Transcriptional regulators 0.60 Psest_1892 6-phosphogluconate dehydratase low > 67
Acidovorax sp. GW101-3H11 0.43 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor 0.55 Ac3H11_2082 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas simiae WCS417 0.41 PS417_21990 LacI family transcriptional regulator 0.60 PS417_22690 phosphogluconate dehydratase low > 88
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.61 PFLU_RS24330 phosphogluconate dehydratase low > 109
Pseudomonas fluorescens SBW25 0.41 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.61 PFLU_RS24330 phosphogluconate dehydratase low > 109
Azospirillum sp. SherDot2 0.40 MPMX19_05332 HTH-type transcriptional regulator GntR 0.57 MPMX19_05118 Phosphogluconate dehydratase — —
Pseudomonas sp. RS175 0.40 PFR28_00593 HTH-type transcriptional regulator GntR 0.59 PFR28_00561 Phosphogluconate dehydratase low > 88
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_05065 LacI family transcriptional regulator 0.59 AO356_05220 phosphogluconate dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_03255 LacI family transcriptional regulator 0.59 AO353_03420 phosphogluconate dehydratase low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor 0.57 GFF5495 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_3336 transcriptional regulator, LacI family 0.59 Psyr_1109 6-phosphogluconate dehydratase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_3336 transcriptional regulator, LacI family 0.59 Psyr_1109 6-phosphogluconate dehydratase low > 86
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor 0.59 Pf6N2E2_2898 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor 0.58 Pf1N1B4_601 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor 0.58 PfGW456L13_1889 Phosphogluconate dehydratase (EC 4.2.1.12) 0.34 5
Pseudomonas putida KT2440 0.39 PP_3415 Transcriptional regulator, LacI family 0.60 PP_1010 phosphogluconate dehydratase — —
Variovorax sp. SCN45 0.33 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 0.54 GFF6513 Phosphogluconate dehydratase (EC 4.2.1.12) low > 127
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS03860 transcriptional regulator 0.59 RR42_RS06125 phosphogluconate dehydratase low > 128
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS10090 LacI family DNA-binding transcriptional regulator 0.86 QEN71_RS26920 phosphogluconate dehydratase low > 153
Klebsiella michiganensis M5al 0.32 BWI76_RS13575 sugar binding transcriptional regulator, LacI family protein 0.57 BWI76_RS18100 phosphogluconate dehydratase low > 92
Paraburkholderia graminis OAS925 0.31 ABIE53_005334 LacI family gluconate utilization system Gnt-I transcriptional repressor 0.91 ABIE53_003517 phosphogluconate dehydratase low > 113
Rahnella sp. WP5 0.31 EX31_RS02290 LacI family DNA-binding transcriptional regulator 0.56 EX31_RS16630 phosphogluconate dehydratase low > 89
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_03425 transcriptional regulator, LacI family 0.91 H281DRAFT_04278 6-phosphogluconate dehydratase — —
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator 0.60 ABZR87_RS22920 phosphogluconate dehydratase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF406 Transcriptional regulator, LacI family 0.57 GFF1630 Phosphogluconate dehydratase (EC 4.2.1.12) low > 78
Ralstonia solanacearum UW163 0.30 UW163_RS16860 GntR family transcriptional regulator 0.60 UW163_RS17125 phosphogluconate dehydratase — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS16125 GntR family transcriptional regulator 0.60 RALBFv3_RS16385 phosphogluconate dehydratase low > 76
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_01485 transcriptional regulator 0.48 CSW01_01480 phosphogluconate dehydratase low > 62
Ralstonia solanacearum PSI07 0.29 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator 0.61 RPSI07_RS07320 phosphogluconate dehydratase low > 81
Ralstonia solanacearum GMI1000 0.29 RS_RS24865 LacI family DNA-binding transcriptional regulator 0.60 RS_RS24620 phosphogluconate dehydratase low > 80
Escherichia coli ECRC62 0.29 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR 0.57 BNILDI_15645 edd phosphogluconate dehydratase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00264 HTH-type transcriptional regulator GntR 0.57 OHPLBJKB_01878 Phosphogluconate dehydratase low > 73
Escherichia coli ECRC98 0.29 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR 0.57 JDDGAC_00915 edd phosphogluconate dehydratase low > 86
Escherichia fergusonii Becca 0.29 EFB2_00382 HTH-type transcriptional regulator GntR 0.57 EFB2_02092 Phosphogluconate dehydratase low > 86
Escherichia coli ECRC100 0.29 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR 0.57 OKFHMN_26340 edd phosphogluconate dehydratase low > 80
Escherichia coli Nissle 1917 0.29 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR 0.57 ECOLIN_RS10310 phosphogluconate dehydratase — —
Escherichia coli ECRC102 0.29 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR 0.57 NIAGMN_01720 edd phosphogluconate dehydratase — —
Escherichia coli ECRC99 0.29 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR 0.57 KEDOAH_01765 edd phosphogluconate dehydratase — —
Escherichia coli ECRC101 0.29 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR 0.57 MCAODC_19065 edd phosphogluconate dehydratase low > 87
Escherichia coli ECOR38 0.29 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR 0.57 HEPCGN_04745 edd phosphogluconate dehydratase low > 87
Escherichia coli BW25113 0.29 b3438 gntR DNA-binding transcriptional repressor (NCBI) 0.57 b1851 edd phosphogluconate dehydratase (NCBI) low > 76
Enterobacter sp. TBS_079 0.29 MPMX20_03233 HTH-type transcriptional regulator GntR 0.56 MPMX20_02756 Phosphogluconate dehydratase low > 85
Variovorax sp. OAS795 0.28 ABID97_RS01205 LacI family DNA-binding transcriptional regulator 0.54 ABID97_RS21300 phosphogluconate dehydratase 0.32 19
Escherichia coli ECOR27 0.28 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR 0.57 NOLOHH_16850 edd phosphogluconate dehydratase low > 75
Serratia liquefaciens MT49 0.28 IAI46_23965 gluconate operon transcriptional repressor GntR 0.57 IAI46_23175 phosphogluconate dehydratase low > 86
Enterobacter asburiae PDN3 0.28 EX28DRAFT_4274 transcriptional regulator, LacI family 0.57 EX28DRAFT_0705 6-phosphogluconate dehydratase (EC 4.2.1.12) low > 76
Escherichia coli BL21 0.28 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor 0.57 ECD_01822 6-phosphogluconate dehydratase low > 61
Agrobacterium fabrum C58 0.27 Atu4685 LacI family transcriptional regulator 0.57 Atu0598 phosphogluconate dehydratase low > 89
Alteromonas macleodii MIT1002 0.27 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor 0.58 MIT1002_02405 Phosphogluconate dehydratase low > 70
Sinorhizobium meliloti 1021 0.26 SM_b20667 LacI family transcriptional regulator 0.55 SMc03068 phosphogluconate dehydratase low > 103
Rhizobium sp. OAE497 0.26 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator 0.58 ABIE40_RS03190 phosphogluconate dehydratase low > 107
Dinoroseobacter shibae DFL-12 0.25 Dshi_3322 transcriptional regulator, LacI family (RefSeq) 0.52 Dshi_1769 6-phosphogluconate dehydratase (RefSeq) low > 64
Rhodanobacter denitrificans MT42 0.19 LRK55_RS04775 LacI family DNA-binding transcriptional regulator 0.56 LRK55_RS07610 phosphogluconate dehydratase — —
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS04995 LacI family DNA-binding transcriptional regulator 0.56 LRK54_RS07880 phosphogluconate dehydratase — —
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_01750 purR LacI family transcriptional regulator 0.56 OKGIIK_14370 edd phosphogluconate dehydratase — —
Xanthomonas campestris pv. campestris strain 8004 0.17 Xcc-8004.3387.1 transcriptional regulator 0.54 Xcc-8004.2447.1 Phosphogluconate dehydratase (EC 4.2.1.12) low > 74

Not shown: 10 genomes with orthologs for BPHYT_RS00410 only; 13 genomes with orthologs for BPHYT_RS16735 only