Conservation of cofitness between BPHYT_RS30235 and BPHYT_RS00150 in Burkholderia phytofirmans PsJN

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS30235 tartrate dehydrogenase 1.0 BPHYT_RS00150 DEAD/DEAH box helicase 0.26 4
Paraburkholderia graminis OAS925 0.98 ABIE53_005023 tartrate dehydrogenase/decarboxylase/D-malate dehydrogenase 0.95 ABIE53_000368 ATP-independent RNA helicase DbpA low > 113
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_06345 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase 0.98 H281DRAFT_02294 ATP-dependent RNA helicase DbpA low > 103
Paraburkholderia sabiae LMG 24235 0.88 QEN71_RS32005 tartrate dehydrogenase 0.87 QEN71_RS00065 ATP-dependent RNA helicase DbpA low > 153
Ralstonia solanacearum PSI07 0.80 RPSI07_RS07555 tartrate dehydrogenase 0.87 RPSI07_RS20905 ATP-dependent RNA helicase DbpA low > 81
Ralstonia solanacearum GMI1000 0.79 RS_RS24845 tartrate dehydrogenase 0.86 RS_RS03120 ATP-dependent RNA helicase DbpA low > 80
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS21505 tartrate dehydrogenase 0.83 ABZR87_RS19855 ATP-dependent RNA helicase DbpA low > 80
Serratia liquefaciens MT49 0.76 IAI46_21025 tartrate dehydrogenase 0.55 IAI46_14765 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_28225 tartrate dehydrogenase 0.60 AO353_07850 ATP-dependent RNA helicase low > 101
Acidovorax sp. GW101-3H11 0.75 Ac3H11_3259 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) 0.69 Ac3H11_4671 ATP-dependent 23S rRNA helicase DbpA low > 79
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_4932 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) 0.59 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA low > 87
Variovorax sp. OAS795 0.75 ABID97_RS25885 tartrate dehydrogenase 0.74 ABID97_RS02340 ATP-dependent RNA helicase DbpA low > 91
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_26735 tartrate dehydrogenase 0.59 AO356_13770 ATP-dependent RNA helicase low > 104
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_369 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) 0.59 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA low > 103
Klebsiella michiganensis M5al 0.74 BWI76_RS10680 tartrate dehydrogenase 0.49 BWI76_RS12705 ATP-dependent RNA helicase low > 92
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_2396 Tartrate dehydrogenase 0.59 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_2396 Tartrate dehydrogenase 0.59 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Escherichia coli ECOR38 0.73 HEPCGN_05015 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.49 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA low > 87
Escherichia coli ECOR27 0.73 NOLOHH_17145 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.49 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA low > 75
Escherichia coli ECRC99 0.72 KEDOAH_01485 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.48 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_01933 D-malate dehydrogenase [decarboxylating] 0.48 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA low > 73
Pseudomonas fluorescens SBW25 0.72 PFLU_RS19735 tartrate dehydrogenase 0.58 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS19735 tartrate dehydrogenase 0.58 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Escherichia coli ECRC102 0.72 NIAGMN_01440 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.48 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC100 0.72 OKFHMN_26625 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.48 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA low > 80
Escherichia coli ECRC98 0.72 JDDGAC_01200 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.48 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA low > 86
Escherichia coli BW25113 0.72 b1800 yeaU predicted dehydrogenase (NCBI) 0.48 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) low > 76
Escherichia coli ECRC62 0.72 BNILDI_15930 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.48 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA low > 75
Escherichia coli ECRC101 0.72 MCAODC_18785 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.48 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA low > 87
Escherichia coli BL21 0.72 ECD_01770 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase 0.48 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA low > 61
Castellaniella sp019104865 MT123 0.72 ABCV34_RS14695 tartrate dehydrogenase 0.52 ABCV34_RS04635 ATP-dependent RNA helicase DbpA low > 48
Variovorax sp. SCN45 0.66 GFF6198 D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83) 0.73 GFF7138 ATP-dependent 23S rRNA helicase DbpA low > 127
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS02600 tartrate dehydrogenase 0.82 RR42_RS00295 DEAD/DEAH box helicase low > 128
Dickeya dadantii 3937 0.66 DDA3937_RS04645 tartrate dehydrogenase 0.50 DDA3937_RS11045 ATP-dependent RNA helicase DbpA low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF3852 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) 0.72 GFF5449 ATP-dependent 23S rRNA helicase DbpA low > 90
Dickeya dianthicola ME23 0.66 DZA65_RS04525 tartrate dehydrogenase 0.49 DZA65_RS11470 ATP-dependent RNA helicase DbpA low > 75
Pantoea sp. MT58 0.65 IAI47_17525 tartrate dehydrogenase 0.49 IAI47_15055 ATP-dependent RNA helicase DbpA low > 76
Dickeya dianthicola 67-19 0.65 HGI48_RS04605 tartrate dehydrogenase 0.50 HGI48_RS11065 ATP-dependent RNA helicase DbpA low > 71
Marinobacter adhaerens HP15 0.38 HP15_817 3-isopropylmalate dehydrogenase 0.51 HP15_1329 DEAD/DEAH box helicase domain protein low > 73
Lysobacter sp. OAE881 0.31 ABIE51_RS14200 isocitrate dehydrogenase 0.47 ABIE51_RS14930 ATP-dependent RNA helicase DbpA — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.4057.1 Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) 0.45 Xcc-8004.2274.1 ATP-dependent 23S rRNA helicase DbpA — —
Shewanella loihica PV-4 0.30 Shew_2760 isocitrate dehydrogenase (RefSeq) 0.51 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) — —
Alteromonas macleodii MIT1002 0.30 MIT1002_00983 Isocitrate dehydrogenase [NADP] 0.42 MIT1002_03748 ATP-independent RNA helicase DbpA — —
Shewanella sp. ANA-3 0.30 Shewana3_2890 isocitrate dehydrogenase (RefSeq) 0.54 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) — —
Shewanella amazonensis SB2B 0.29 Sama_2423 isocitrate dehydrogenase (RefSeq) 0.54 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) — —
Shewanella oneidensis MR-1 0.29 SO1538 isocitrate dehydrogenase, NAD-dependent (NCBI ptt file) 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS00740 isocitrate dehydrogenase 0.49 ABZR86_RS05195 ATP-dependent RNA helicase DbpA — —
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS15050 isocitrate dehydrogenase 0.47 LRK54_RS10055 ATP-dependent RNA helicase DbpA — —
Rhodanobacter denitrificans MT42 0.28 LRK55_RS14765 isocitrate dehydrogenase 0.47 LRK55_RS09695 ATP-dependent RNA helicase DbpA — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_03810 leuB isocitrate dehydrogenase 0.47 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_17775 isocitrate dehydrogenase 0.34 CA264_06050 ATP-dependent RNA helicase — —

Not shown: 10 genomes with orthologs for BPHYT_RS30235 only; 17 genomes with orthologs for BPHYT_RS00150 only