Conservation of cofitness between BBR_RS11025 and BBR_RS13700 in Bifidobacterium breve UCC2003

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS11025 aspartate-semialdehyde dehydrogenase 1.0 BBR_RS13700 diaminopimelate epimerase 0.92 8
Methanococcus maripaludis JJ 0.34 MMJJ_RS07195 aspartate-semialdehyde dehydrogenase 0.19 MMJJ_RS00375 diaminopimelate epimerase — —
Methanococcus maripaludis S2 0.34 MMP_RS07160 aspartate-semialdehyde dehydrogenase 0.19 MMP_RS04760 diaminopimelate epimerase — —
Magnetospirillum magneticum AMB-1 0.13 AMB_RS03035 aspartate-semialdehyde dehydrogenase 0.14 AMB_RS01095 diaminopimelate epimerase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.12 A4249_RS12690 aspartate-semialdehyde dehydrogenase 0.14 A4249_RS13290 diaminopimelate epimerase — —
Synechococcus elongatus PCC 7942 0.12 Synpcc7942_1848 asd aspartate-semialdehyde dehydrogenase 0.18 Synpcc7942_1927 dapF diaminopimelate epimerase — —
Dinoroseobacter shibae DFL-12 0.12 Dshi_3240 aspartate-semialdehyde dehydrogenase (RefSeq) 0.13 Dshi_3228 Diaminopimelate epimerase (RefSeq) — —
Azospirillum sp. SherDot2 0.12 MPMX19_02000 Aspartate-semialdehyde dehydrogenase 2 0.17 MPMX19_00602 Diaminopimelate epimerase — —
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS05255 aspartate-semialdehyde dehydrogenase 0.17 HMPREF1078_RS01230 diaminopimelate epimerase — —
Desulfovibrio vulgaris Hildenborough JW710 0.12 DVU3048 asd aspartate-semialdehyde dehydrogenase (TIGR) 0.11 DVU1867 dapF diaminopimelate epimerase (TIGR) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.12 Echvi_0713 aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) 0.14 Echvi_1430 diaminopimelate epimerase — —
Phaeobacter inhibens DSM 17395 0.11 PGA1_c31480 aspartate-semialdehyde dehydrogenase Asd 0.14 PGA1_c33950 diaminopimelate epimerase DapF — —
Mycobacterium tuberculosis H37Rv 0.11 Rv3708c Aspartate-semialdehyde dehydrogenase Asd (ASA dehydrogenase) (ASADH) (aspartic semialdehyde dehydrogenase) (L-aspartate-beta-semialdehyde dehydrogenase) 0.19 Rv2726c Probable diaminopimelate epimerase DapF (DAP epimerase) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.11 ABZR88_RS18675 aspartate-semialdehyde dehydrogenase 0.12 ABZR88_RS21670 diaminopimelate epimerase — —
Rhodospirillum rubrum S1H 0.11 Rru_A1196 Aspartate-semialdehyde dehydrogenase, USG-1 related (NCBI) 0.16 Rru_A1183 Diaminopimelate epimerase (NCBI) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.11 CA264_18890 aspartate-semialdehyde dehydrogenase 0.14 CA264_19550 diaminopimelate epimerase — —
Vibrio cholerae E7946 ATCC 55056 0.11 CSW01_10520 Aspartate-semialdehyde dehydrogenase 2 0.14 CSW01_00640 diaminopimelate epimerase — —
Shewanella oneidensis MR-1 0.11 SO3070 asd aspartate semialdehyde dehydrogenese (NCBI ptt file) 0.15 SO4308 dapF diaminopimelate epimerase (NCBI ptt file) — —
Pseudomonas fluorescens FW300-N2E2 0.11 Pf6N2E2_4232 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 0.11 Pf6N2E2_4418 Diaminopimelate epimerase (EC 5.1.1.7) low > 103
Shewanella sp. ANA-3 0.10 Shewana3_1477 aspartate semialdehyde dehydrogenase (RefSeq) 0.15 Shewana3_0391 dapF diaminopimelate epimerase (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.10 Xcc-8004.1957.1 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 0.14 Xcc-8004.845.1 Diaminopimelate epimerase (EC 5.1.1.7) — —
Phocaeicola dorei CL03T12C01 0.10 ABI39_RS01110 aspartate-semialdehyde dehydrogenase 0.17 ABI39_RS14295 diaminopimelate epimerase — —
Phocaeicola vulgatus CL09T03C04 0.10 HMPREF1058_RS00210 aspartate-semialdehyde dehydrogenase 0.15 HMPREF1058_RS06915 diaminopimelate epimerase — —
Shewanella amazonensis SB2B 0.10 Sama_2152 aspartate-semialdehyde dehydrogenase (RefSeq) 0.13 Sama_3249 dapF diaminopimelate epimerase (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.10 CA265_RS15395 aspartate-semialdehyde dehydrogenase 0.14 CA265_RS23025 diaminopimelate epimerase — —
Rhodanobacter sp. FW510-T8 0.10 OKGIIK_04815 asd aspartate-semialdehyde dehydrogenase 0.16 OKGIIK_15335 dapF diaminopimelate epimerase — —
Pseudomonas sp. RS175 0.10 PFR28_04564 Aspartate-semialdehyde dehydrogenase 0.10 PFR28_04376 Diaminopimelate epimerase — —
Bacteroides ovatus ATCC 8483 0.10 BACOVA_03470 aspartate-semialdehyde dehydrogenase 0.18 BACOVA_03762 diaminopimelate epimerase — —
Shewanella loihica PV-4 0.10 Shew_2308 aspartate-semialdehyde dehydrogenase (RefSeq) 0.15 Shew_0323 dapF diaminopimelate epimerase (RefSeq) — —
Azospirillum brasilense Sp245 0.10 AZOBR_RS14735 aspartate-semialdehyde dehydrogenase 0.16 AZOBR_RS14160 diaminopimelate epimerase — —
Rhodanobacter denitrificans MT42 0.10 LRK55_RS01495 aspartate-semialdehyde dehydrogenase 0.15 LRK55_RS08310 diaminopimelate epimerase — —
Dyella japonica UNC79MFTsu3.2 0.10 ABZR86_RS08030 aspartate-semialdehyde dehydrogenase 0.17 ABZR86_RS15015 diaminopimelate epimerase — —
Bacteroides thetaiotaomicron VPI-5482 0.10 BT3636 aspartate-semialdehyde dehydrogenase (NCBI ptt file) 0.17 BT0548 diaminopimelate epimerase (NCBI ptt file) — —
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_2382 aspartate-semialdehyde dehydrogenase (RefSeq) 0.10 DvMF_0561 dapF diaminopimelate epimerase (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.10 LRK54_RS01715 aspartate-semialdehyde dehydrogenase 0.15 LRK54_RS08545 diaminopimelate epimerase — —
Bacteroides stercoris CC31F 0.10 HMPREF1181_RS03115 aspartate-semialdehyde dehydrogenase 0.15 HMPREF1181_RS16035 diaminopimelate epimerase — —
Lysobacter sp. OAE881 0.10 ABIE51_RS08235 aspartate-semialdehyde dehydrogenase 0.13 ABIE51_RS03025 diaminopimelate epimerase — —
Serratia liquefaciens MT49 0.08 IAI46_17845 aspartate-semialdehyde dehydrogenase 0.14 IAI46_00715 diaminopimelate epimerase — —
Dickeya dadantii 3937 0.08 DDA3937_RS14470 aspartate-semialdehyde dehydrogenase 0.14 DDA3937_RS19900 diaminopimelate epimerase — —
Dickeya dianthicola 67-19 0.08 HGI48_RS14440 aspartate-semialdehyde dehydrogenase 0.15 HGI48_RS20055 diaminopimelate epimerase — —

Not shown: 8 genomes with orthologs for BBR_RS11025 only; 52 genomes with orthologs for BBR_RS13700 only