Conservation of cofitness between BBR_RS19500 and BBR_RS11790 in Bifidobacterium breve UCC2003

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS19500 fuconate dehydratase 1.0 BBR_RS11790 endonuclease III 0.34 14
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS01320 enolase C-terminal domain-like protein 0.30 ABZR86_RS08185 endonuclease III low > 74
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.5167.1 L-fuconate dehydratase (EC 4.2.1.68) 0.31 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) low > 74
Serratia liquefaciens MT49 0.53 IAI46_02800 L-fuconate dehydratase 0.29 IAI46_11455 endonuclease III low > 86
Echinicola vietnamensis KMM 6221, DSM 17526 0.53 Echvi_2941 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 0.35 Echvi_1263 endonuclease III 0.31 52
Rahnella sp. WP5 0.52 EX31_RS02095 L-fuconate dehydratase 0.29 EX31_RS06590 endonuclease III low > 89
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS05235 L-fuconate dehydratase (EC 4.2.1.68) (from data) 0.31 HSERO_RS08070 endonuclease IV low > 78
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS12050 L-fuconate dehydratase 0.29 ABZR87_RS09915 endonuclease III low > 80
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS20755 fuconate dehydratase 0.29 BPHYT_RS06080 endonuclease IV low > 109
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS38590 L-fuconate dehydratase 0.29 QEN71_RS24560 endonuclease III low > 153
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_00429 L-fuconate dehydratase 0.30 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III low > 103
Paraburkholderia graminis OAS925 0.49 ABIE53_002827 L-fuconate dehydratase 0.31 ABIE53_001423 endonuclease-3 low > 113
Castellaniella sp019104865 MT123 0.49 ABCV34_RS12060 L-fuconate dehydratase 0.29 ABCV34_RS08465 endonuclease III low > 48
Pseudomonas putida KT2440 0.47 PP_2831 L-fuconate dehydratase 0.30 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites low > 96
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS04225 mandelate racemase 0.34 CA265_RS00605 endonuclease III low > 88
Bosea sp. OAE506 0.17 ABIE41_RS20200 mandelate racemase/muconate lactonizing enzyme family protein 0.28 ABIE41_RS03410 endonuclease III low > 77
Cupriavidus basilensis FW507-4G11 0.16 RR42_RS34985 mandelate racemase 0.30 RR42_RS05970 endonuclease III low > 128
Variovorax sp. SCN45 0.15 GFF5393 mandelate racemase/muconate lactonizing enzyme family protein 0.29 GFF418 Endonuclease III (EC 4.2.99.18) low > 127
Pseudomonas stutzeri RCH2 0.12 Psest_0369 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 0.28 Psest_3118 endonuclease III low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS01120 mandelate racemase/muconate lactonizing enzyme family protein 0.34 ABZR88_RS16725 endonuclease III low > 71
Variovorax sp. OAS795 0.10 ABID97_RS13085 mandelate racemase/muconate lactonizing enzyme family protein 0.29 ABID97_RS17315 endonuclease III low > 91
Lysobacter sp. OAE881 0.10 ABIE51_RS10525 mandelate racemase/muconate lactonizing enzyme family protein 0.30 ABIE51_RS07560 endonuclease III low > 62
Azospirillum brasilense Sp245 0.10 AZOBR_RS26635 mandelate racemase 0.28 AZOBR_RS01565 endonuclease III low > 97
Rhodanobacter sp. FW510-T8 0.08 OKGIIK_12510 dgoD galactonate dehydratase 0.27 OKGIIK_04675 nth endonuclease III low > 52
Parabacteroides merdae CL09T00C40 0.08 HMPREF1078_RS06060 mandelate racemase/muconate lactonizing enzyme family protein 0.34 HMPREF1078_RS09755 endonuclease III low > 61
Pantoea sp. MT58 0.08 IAI47_00045 galactonate dehydratase 0.30 IAI47_10475 endonuclease III low > 76
Acidovorax sp. GW101-3H11 0.08 Ac3H11_600 Galactonate dehydratase (EC 4.2.1.6) 0.28 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) low > 79
Pseudomonas fluorescens FW300-N1B4 0.08 Pf1N1B4_3383 Mandelate racemase (EC 5.1.2.2) 0.29 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) low > 87
Escherichia coli Nissle 1917 0.08 ECOLIN_RS08840 starvation-sensing protein RspA 0.30 ECOLIN_RS09110 endonuclease III — —
Escherichia fergusonii Becca 0.08 EFB2_02411 D-galactonate dehydratase family member RspA 0.30 EFB2_02359 Endonuclease III low > 86
Escherichia coli ECOR38 0.08 HEPCGN_22370 rspA mandelate racemase/muconate lactonizing enzyme family protein 0.30 HEPCGN_05910 nth endonuclease III low > 87
Pseudomonas fluorescens FW300-N2C3 0.07 AO356_20290 galactonate dehydratase 0.28 AO356_18345 endonuclease III low > 104
Enterobacter asburiae PDN3 0.07 EX28DRAFT_1457 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 0.30 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 76
Escherichia coli ECRC62 0.07 BNILDI_17100 rspA starvation-sensing protein RspA 0.30 BNILDI_16835 nth endonuclease III low > 75
Escherichia coli BW25113 0.07 b1581 rspA predicted dehydratase (NCBI) 0.30 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) low > 76
Escherichia coli ECOR27 0.07 NOLOHH_18310 rspA starvation-sensing protein RspA 0.30 NOLOHH_18045 nth endonuclease III — —
Pseudomonas fluorescens FW300-N2E2 0.07 Pf6N2E2_5977 Galactonate dehydratase (EC 4.2.1.6) 0.29 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) low > 103
Escherichia coli HS(pFamp)R (ATCC 700891) 0.07 OHPLBJKB_02145 Starvation-sensing protein RspA 0.30 OHPLBJKB_02093 Endonuclease III low > 73
Escherichia coli BL21 0.07 ECD_01550 bifunctional D-altronate/D-mannonate dehydratase 0.30 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) — —
Pseudomonas fluorescens SBW25 0.07 PFLU_RS00160 galactonate dehydratase 0.28 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens SBW25-INTG 0.07 PFLU_RS00160 galactonate dehydratase 0.28 PFLU_RS05740 endonuclease III low > 109
Pseudomonas syringae pv. syringae B728a 0.07 Psyr_1989 galactonate dehydratase 0.29 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.07 Psyr_1989 galactonate dehydratase 0.29 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Enterobacter sp. TBS_079 0.07 MPMX20_02092 D-galactonate dehydratase family member 0.29 MPMX20_02005 Endonuclease III low > 85
Ralstonia solanacearum PSI07 0.07 RPSI07_RS11425 galactonate dehydratase 0.28 RPSI07_RS19265 endonuclease III low > 81
Ralstonia solanacearum GMI1000 0.07 RS_RS13765 D-galactonate dehydratase 0.29 RS_RS04975 endonuclease III low > 80
Brevundimonas sp. GW460-12-10-14-LB2 0.06 A4249_RS07695 L-rhamnonate dehydratase 0.28 A4249_RS15000 endonuclease III low > 48

Not shown: 3 genomes with orthologs for BBR_RS19500 only; 49 genomes with orthologs for BBR_RS11790 only