| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | 1.0 | Atu3469 | | phosphoglyceromutase | 0.26 | 16 |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A1435 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | 0.52 | Rru_A1234 | | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.55 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.54 | MPMX19_01939 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 112 |
| Azospirillum brasilense Sp245 | 0.53 | AZOBR_RS21130 | | Fis family transcriptional regulator | 0.54 | AZOBR_RS04055 | | phosphoglyceromutase | — | — |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_4132 | | alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) | 0.42 | Psest_0162 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas segetis P6 | 0.50 | MPMX49_00215 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.44 | MPMX49_04294 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_03805 | | C4-dicarboxylate ABC transporter | 0.44 | AO353_12115 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 101 |
| Pseudomonas lactucae CFBP13502 | 0.49 | GEMAOFIL_04682 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.44 | GEMAOFIL_00541 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.74 | 15 |
| Pseudomonas aeruginosa MRSN321 | 0.49 | DY961_RS25855 | | sigma-54 dependent transcriptional regulator | 0.43 | DY961_RS11485 | gpmI;go_function=2%2C3-bisphosphoglycerate-independent | 2 3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.49 | DQ20_RS58285 | | sigma-54 dependent transcriptional regulator | 0.43 | DQ20_RS50615 | gpmI;go_function=2%2C3-bisphosphoglycerate-independent | 2 3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas aeruginosa PA14 | 0.49 | IKLFDK_25855 | | DNA-binding response regulator | 0.43 | IKLFDK_27850 | | 2 3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.49 | Pf1N1B4_685 | | Nitrogen regulation protein NR(I) | 0.43 | Pf1N1B4_1617 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | — | — |
| Marinobacter adhaerens HP15 | 0.49 | HP15_725 | | two component, sigma54 specific, transcriptional regulator, Fis family | 0.44 | HP15_3005 | | phosphoglyceromutase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.49 | PfGW456L13_1806 | | Nitrogen regulation protein NR(I) | 0.44 | PfGW456L13_353 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | — | — |
| Pseudomonas sp. DMC3 | 0.49 | GFF5041 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.44 | GFF4089 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas simiae WCS417 | 0.48 | PS417_22645 | | C4-dicarboxylate ABC transporter | 0.44 | PS417_01605 | | phosphoglycerate mutase | 0.13 | 76 |
| Pseudomonas orientalis W4I3 | 0.48 | QF045_RS24815 | | sigma-54 dependent transcriptional regulator | 0.43 | QF045_RS04675 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 93 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | 0.43 | CSW01_01740 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Dechlorosoma suillum PS | 0.48 | Dsui_3486 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.28 | Dsui_2175 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS23460 | | sigma-54 dependent transcriptional regulator | 0.46 | ECOLIN_RS20615 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 55 |
| Escherichia fergusonii Becca | 0.48 | EFB2_04538 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.46 | EFB2_00198 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_17800 | | C4-dicarboxylate ABC transporter | 0.43 | AO356_09770 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS24280 | | sigma-54-dependent Fis family transcriptional regulator | 0.44 | PFLU_RS01655 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS24280 | | sigma-54-dependent Fis family transcriptional regulator | 0.44 | PFLU_RS01655 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas sp. RS175 | 0.48 | PFR28_03462 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.43 | PFR28_04938 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_5487 | | Nitrogen regulation protein NR(I) | 0.42 | Pf6N2E2_3832 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | — | — |
| Pseudomonas sp. S08-1 | 0.47 | OH686_13325 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | 0.43 | OH686_14655 | | phosphoglycerate mutase (2,3-diphosphoglycerate-independent) | — | — |
| Pseudomonas sp. SVBP6 | 0.47 | COO64_RS16760 | | sigma-54 dependent transcriptional regulator | 0.44 | COO64_RS13295 | gpmI | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas putida KT2440 | 0.47 | PP_1066 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.44 | PP_5056 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas sp. BP01 | 0.47 | JOY50_RS14825 | | sigma-54 dependent transcriptional regulator | 0.44 | JOY50_RS09420 | gpmI | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.43 | Psyr_4885 | | phosphoglycerate mutase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.43 | Psyr_4885 | | phosphoglycerate mutase | — | — |
| Shewanella amazonensis SB2B | 0.46 | Sama_2213 | | response regulator receiver protein (RefSeq) | 0.45 | Sama_0060 | | phosphoglyceromutase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.45 | Shew_1442 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.45 | Shew_3806 | | phosphoglyceromutase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.45 | SO3138 | dctD | C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) | 0.44 | SO0049 | gpmA | phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.45 | Shewana3_1412 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.44 | Shewana3_0051 | | phosphoglyceromutase (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.35 | BWI76_RS21250 | | two-component system response regulator GlrR | 0.46 | BWI76_RS27230 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 92 |
| Desulfovibrio vulgaris Miyazaki F | 0.34 | DvMF_0823 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.37 | DvMF_0439 | | phosphoglyceromutase (RefSeq) | — | — |
| Klebsiella pneumoniae MKP103 | 0.34 | KDGMDA_28370 | | two-component system response regulator QseF/GlrR | 0.46 | KDGMDA_07915 | | 2 3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 95 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.34 | GFF2455 | | Putative sensory histidine kinase YfhA | 0.46 | GFF398 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | low | > 78 |
| Rahnella sp. WP5 | 0.34 | EX31_RS20615 | | two-component system response regulator GlrR | 0.45 | EX31_RS14360 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 89 |
| Serratia liquefaciens MT49 | 0.34 | IAI46_19460 | | two-component system response regulator GlrR | 0.44 | IAI46_24710 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 87 |
| Escherichia coli ECOR27 | 0.33 | NOLOHH_13170 | qseF | two-component system response regulator QseF/GlrR | 0.46 | NOLOHH_07615 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 76 |
| Escherichia coli ECRC62 | 0.33 | BNILDI_11970 | qseF | two-component system response regulator QseF/GlrR | 0.46 | BNILDI_03900 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 75 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_03423 | | Transcriptional regulatory protein QseF | 0.46 | MPMX20_00121 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 85 |
| Escherichia coli ECRC102 | 0.33 | NIAGMN_19265 | qseF | two-component system response regulator QseF/GlrR | 0.46 | NIAGMN_13495 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 80 |
| Escherichia coli ECRC100 | 0.33 | OKFHMN_21495 | qseF | two-component system response regulator QseF/GlrR | 0.46 | OKFHMN_15735 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 79 |
| Enterobacter asburiae PDN3 | 0.33 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.46 | EX28DRAFT_3863 | | phosphoglycerate mutase (EC 5.4.2.1) | low | > 76 |
| Escherichia coli ECRC101 | 0.33 | MCAODC_12025 | qseF | two-component system response regulator QseF/GlrR | 0.46 | MCAODC_06245 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 87 |
| Escherichia coli ECRC98 | 0.33 | JDDGAC_25160 | qseF | two-component system response regulator QseF/GlrR | 0.46 | JDDGAC_19360 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 87 |
| Escherichia coli ECRC99 | 0.33 | KEDOAH_06725 | qseF | two-component system response regulator QseF/GlrR | 0.46 | KEDOAH_12415 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.32 | BACOVA_04200 | | Sigma-54 interaction domain protein | 0.38 | BACOVA_01888 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.32 | Echvi_2422 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.42 | Echvi_0844 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.32 | BT1469 | | two-component system response regulator (NCBI ptt file) | 0.39 | BT3419 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (NCBI ptt file) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.32 | HMPREF1058_RS03345 | | sigma-54-dependent Fis family transcriptional regulator | 0.38 | HMPREF1058_RS12285 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.32 | ABI39_RS17680 | | sigma-54-dependent Fis family transcriptional regulator | 0.38 | ABI39_RS04505 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.30 | HMPREF1078_RS05570 | | sigma-54 dependent transcriptional regulator | 0.39 | HMPREF1078_RS04580 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | — | — |
Not shown: 33 genomes with orthologs for Atu3296 only; 22 genomes with orthologs for Atu3469 only