| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu0035 | | phosphoenolpyruvate carboxykinase | 1.0 | Atu2747 | | hypothetical protein | 0.51 | 17 |
| Sinorhizobium meliloti 1021 | 0.80 | SMc02562 | | phosphoenolpyruvate carboxykinase | 0.77 | SMc02812 | | hypothetical protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.80 | ABIE40_RS19415 | | phosphoenolpyruvate carboxykinase | 0.76 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Rhodopseudomonas palustris CGA009 | 0.69 | TX73_001865 | | phosphoenolpyruvate carboxykinase | 0.59 | TX73_001485 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Bosea sp. OAE506 | 0.67 | ABIE41_RS02665 | | phosphoenolpyruvate carboxykinase | 0.58 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.64 | Dshi_0213 | | Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) | 0.53 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.63 | Ga0059261_0913 | | phosphoenolpyruvate carboxykinase (ATP) | 0.49 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | low | > 68 |
| Phaeobacter inhibens DSM 17395 | 0.63 | PGA1_c01140 | | phosphoenolpyruvate carboxykinase | 0.53 | PGA1_c33360 | | putative alanine racemase | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.51 | CA264_05270 | | phosphoenolpyruvate carboxykinase (ATP) | 0.23 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.49 | Echvi_2957 | | phosphoenolpyruvate carboxykinase (ATP) | 0.24 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Shewanella amazonensis SB2B | 0.47 | Sama_0165 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) | 0.33 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.47 | CA265_RS23490 | | phosphoenolpyruvate carboxykinase (ATP) | 0.23 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | low | > 88 |
| Fusobacterium nucleatum SB010 | 0.47 | HUW76_06485 | | phosphoenolpyruvate carboxykinase (ATP) | 0.22 | HUW76_07280 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 35 |
| Shewanella loihica PV-4 | 0.46 | Shew_3623 | | phosphoenolpyruvate carboxykinase (RefSeq) | 0.37 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.45 | SO0162 | pckA | phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) | 0.32 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.45 | Shewana3_0147 | | phosphoenolpyruvate carboxykinase (RefSeq) | 0.34 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_2395 | | phosphoenolpyruvate carboxykinase (ATP) | 0.32 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | low | > 40 |
| Escherichia coli BL21 | 0.44 | ECD_03255 | | phosphoenolpyruvate carboxykinase [ATP] | 0.30 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 60 |
| Escherichia coli ECRC62 | 0.44 | BNILDI_02685 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECOR27 | 0.44 | NOLOHH_08835 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 57 |
| Escherichia coli BW25113 | 0.44 | b3403 | pck | phosphoenolpyruvate carboxykinase (NCBI) | 0.30 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_00300 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.30 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | low | > 73 |
| Escherichia fergusonii Becca | 0.44 | EFB2_00425 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.30 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_15865 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 85 |
| Escherichia coli Nissle 1917 | 0.44 | ECOLIN_RS19435 | | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | low | > 52 |
| Escherichia coli ECRC99 | 0.44 | KEDOAH_11095 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Serratia liquefaciens MT49 | 0.44 | IAI46_10700 | | phosphoenolpyruvate carboxykinase (ATP) | 0.25 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Escherichia coli ECRC101 | 0.44 | MCAODC_07575 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC101 | 0.44 | OKFHMN_17045 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC102 | 0.44 | NIAGMN_14815 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC98 | 0.44 | JDDGAC_20675 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.44 | GFF615 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | 0.30 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.44 | LU632_RS22930 | pckA | phosphoenolpyruvate carboxykinase (ATP) | 0.28 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | 31 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS19740 | | phosphoenolpyruvate carboxykinase (ATP) | 0.31 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_03972 | | Phosphoenolpyruvate carboxykinase [ATP] | 0.33 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Pantoea sp. MT58 | 0.43 | IAI47_01830 | | phosphoenolpyruvate carboxykinase (ATP) | 0.29 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Rahnella sp. WP5 | 0.43 | EX31_RS04780 | | phosphoenolpyruvate carboxykinase (ATP) | 0.29 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS01710 | | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_4140 | | phosphoenolpyruvate carboxykinase (ATP) | 0.32 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS20830 | | phosphoenolpyruvate carboxykinase (ATP) | 0.40 | DZA65_RS03335 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_04290 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.30 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS19610 | | phosphoenolpyruvate carboxykinase (ATP) | 0.33 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS26155 | | phosphoenolpyruvate carboxykinase (ATP) | 0.31 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_13810 | | phosphoenolpyruvate carboxykinase (ATP) | 0.34 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3988 | | phosphoenolpyruvate carboxykinase (ATP) | 0.29 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.31 | 52 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_11060 | | phosphoenolpyruvate carboxykinase (ATP) | 0.30 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Phocaeicola dorei CL03T12C01 | 0.41 | ABI39_RS06685 | | phosphoenolpyruvate carboxykinase (ATP) | 0.21 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.41 | HMPREF1058_RS10065 | | phosphoenolpyruvate carboxykinase (ATP) | 0.21 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Parabacteroides merdae CL09T00C40 | 0.40 | HMPREF1078_RS07235 | | phosphoenolpyruvate carboxykinase (ATP) | 0.25 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Marinobacter adhaerens HP15 | 0.40 | HP15_3498 | | phosphoenolpyruvate carboxykinase (ATP) | 0.26 | HP15_288 | | alanine racemase domain protein | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.39 | BT2790 | | phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) | 0.25 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.39 | HMPREF1181_RS01170 | | phosphoenolpyruvate carboxykinase (ATP) | 0.23 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Pseudomonas sp. RS175 | 0.39 | PFR28_04874 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.26 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.32 | 34 |
| Bacteroides ovatus ATCC 8483 | 0.39 | BACOVA_02011 | | phosphoenolpyruvate carboxykinase (ATP) | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_11775 | | phosphoenolpyruvate carboxykinase [ATP] | 0.31 | AO353_10505 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.38 | PfGW456L13_420 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | 0.27 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.38 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.38 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.38 | Pf6N2E2_3899 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | 0.27 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.26 | 87 |
| Pseudomonas simiae WCS417 | 0.38 | PS417_01210 | | hypothetical protein | 0.28 | PS417_26725 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.38 | AO356_10140 | | phosphoenolpyruvate carboxykinase [ATP] | 0.29 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.38 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.38 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
Not shown: 1 genomes with orthologs for Atu0035 only; 38 genomes with orthologs for Atu2747 only