Conservation of cofitness between AO353_06855 and AO353_29350 in Pseudomonas fluorescens FW300-N2E3

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_06855 ABC-ATPase UvrA 1.0 AO353_29350 DNA polymerase II 0.66 5
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.89 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) low > 87
Pseudomonas simiae WCS417 0.98 PS417_25395 excinuclease ABC subunit A 0.83 PS417_09565 DNA polymerase II low > 88
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.90 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) low > 87
Pseudomonas fluorescens SBW25 0.98 PFLU_RS27025 excinuclease ABC subunit UvrA 0.81 PFLU_RS10185 DNA polymerase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS27025 excinuclease ABC subunit UvrA 0.81 PFLU_RS10185 DNA polymerase II low > 109
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.88 AO356_01325 DNA polymerase II 0.46 20
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.88 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.40 20
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.87 PFR28_01299 DNA polymerase II low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.87 GFF1404 DNA polymerase II low > 89
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.83 COO64_RS07850 DNA polymerase II low > 93
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.85 Psyr_2361 DNA damage-inducible DNA polymerase II low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.85 Psyr_2361 DNA damage-inducible DNA polymerase II low > 86
Pseudomonas sp. BP01 0.94 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.76 JOY50_RS10610 DNA polymerase II low > 84
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.77 PP_2393 DNA polymerase II — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.80 OH686_16850 DNA polymerase II low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.80 IKLFDK_09200 DNA polymerase II low > 101
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.79 Psest_1519 DNA polymerase elongation subunit (family B) 0.30 22
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.69 ECOLIN_RS00320 DNA polymerase II low > 55
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.69 EFB2_03985 DNA polymerase II low > 86
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.68 JDDGAC_14390 polB DNA polymerase II low > 86
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.68 KEDOAH_17360 polB DNA polymerase II — —
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.68 NIAGMN_08645 polB DNA polymerase II — —
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.72 EX31_RS03740 DNA polymerase II low > 89
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.68 MCAODC_01310 polB DNA polymerase II low > 87
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.69 BNILDI_08465 polB DNA polymerase II low > 75
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.69 b0060 polB DNA polymerase II (NCBI) 0.42 11
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.69 HEPCGN_08785 polB DNA polymerase II low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.69 OHPLBJKB_03598 DNA polymerase II low > 73
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.69 NOLOHH_03140 polB DNA polymerase II low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.68 GFF182 DNA polymerase II (EC 2.7.7.7) low > 78
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.68 OKFHMN_10795 polB DNA polymerase II low > 80
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.69 ECD_00062 DNA polymerase II low > 61
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.69 DZA65_RS19305 DNA polymerase II low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.69 HGI48_RS18165 DNA polymerase II low > 71
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.70 DDA3937_RS18230 DNA polymerase II low > 74
Enterobacter asburiae PDN3 0.77 EX28DRAFT_4246 excinuclease ABC, A subunit 0.69 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) low > 76
Enterobacter sp. TBS_079 0.77 MPMX20_00276 UvrABC system protein A 0.69 MPMX20_00754 DNA polymerase II low > 85
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.69 BWI76_RS04575 DNA polymerase II low > 92
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.69 HER17_RS02995 DNA polymerase II low > 75
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.69 IAI47_16050 DNA polymerase II low > 76
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.76 IAI46_03280 DNA polymerase II 0.49 13
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.40 MIT1002_03358 DNA polymerase II low > 70
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.51 CSW01_06130 DNA polymerase II low > 62
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.69 OLJFJH_01335 DNA polymerase II low > 58
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.68 LU632_RS02810 polB DNA polymerase II low > 74
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.39 SO1820 polB DNA polymerase II (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.40 Sama_1250 DNA polymerase II (RefSeq) 0.61 11
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.40 Shewana3_2629 DNA polymerase II (RefSeq) low > 73
Shewanella loihica PV-4 0.74 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.41 Shew_2482 DNA polymerase II (RefSeq) 0.85 6
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.67 HSERO_RS12200 DNA polymerase II low > 78
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.77 RR42_RS09335 DNA polymerase II 0.67 8
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.76 QEN71_RS13385 DNA polymerase II low > 153
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.76 BPHYT_RS23105 DNA polymerase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.76 H281DRAFT_01369 DNA damage-inducible DNA polymerase II low > 103
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.76 ABIE53_004018 DNA polymerase-2 low > 113
Variovorax sp. SCN45 0.67 GFF4944 Excinuclease ABC subunit A 0.57 GFF7213 DNA polymerase II (EC 2.7.7.7) low > 127
Methanococcus maripaludis JJ 0.55 MMJJ_RS01235 excinuclease ABC subunit UvrA 0.08 MMJJ_RS03280 DNA-directed DNA polymerase 0.74 2
Methanococcus maripaludis S2 0.54 MMP_RS03815 excinuclease ABC subunit UvrA 0.08 MMP_RS02025 DNA-directed DNA polymerase low > 25

Not shown: 54 genomes with orthologs for AO353_06855 only; 0 genomes with orthologs for AO353_29350 only