Conservation of cofitness between AO353_16875 and AO353_20865 in Pseudomonas fluorescens FW300-N2E3

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 1.0 AO353_20865 cold-shock protein 0.33 9
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 1.00 PfGW456L13_3902 Cold shock protein CspG — —
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 1.00 Pf1N1B4_6025 Cold shock protein CspG — —
Pseudomonas sp. RS175 0.97 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO 0.99 PFR28_02727 Cold shock protein CapB low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 1.00 AO356_00920 cold-shock protein 0.22 99
Pseudomonas fluorescens SBW25 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.97 PFLU_RS20330 cold-shock protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 1.00 Pf6N2E2_171 Cold shock protein CspG — —
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.97 PFLU_RS20330 cold-shock protein low > 109
Pseudomonas simiae WCS417 0.96 PS417_05880 ribosomal protein S12 methylthiotransferase 0.97 PS417_18355 DNA-binding protein low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.90 Psyr_2160 cold-shock DNA-binding protein family — —
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.90 Psyr_2160 cold-shock DNA-binding protein family low > 86
Pseudomonas putida KT2440 0.89 PP_1197 ribosomal protein S12 methylthiotransferase 0.96 PP_2463 nucleic acid cold-shock chaperone — —
Castellaniella sp019104865 MT123 0.77 ABCV34_RS14230 30S ribosomal protein S12 methylthiotransferase RimO 0.63 ABCV34_RS11730 cold-shock protein low > 48
Erwinia tracheiphila SCR3 0.72 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.63 LU632_RS19015 cspA RNA chaperone/antiterminator CspA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.61 GFF454 Cold shock protein CspA low > 78
Escherichia coli BW25113 0.72 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) 0.61 b3556 cspA major cold shock protein (NCBI) — —
Escherichia coli BL21 0.72 ECD_00802 ribosomal protein S12 methylthiotransferase 0.61 ECD_03406 RNA chaperone and antiterminator, cold-inducible — —
Escherichia coli ECRC62 0.72 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 BNILDI_03595 cspA Major cold shock protein low > 75
Escherichia coli ECOR38 0.72 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 HEPCGN_14895 cspA Major cold shock protein low > 87
Escherichia coli ECRC98 0.72 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 JDDGAC_19635 cspA Major cold shock protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO 0.61 OHPLBJKB_00150 Cold shock protein CspA low > 73
Escherichia coli ECRC101 0.72 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 MCAODC_06520 cspA Major cold shock protein low > 87
Escherichia coli ECRC99 0.72 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 KEDOAH_12145 cspA Major cold shock protein — —
Escherichia coli ECRC102 0.72 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 NIAGMN_13765 cspA Major cold shock protein — —
Escherichia coli ECOR27 0.72 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 NOLOHH_07950 cspA Major cold shock protein low > 75
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.65 EX28DRAFT_2409 Cold shock proteins — —
Escherichia coli ECRC100 0.72 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 OKFHMN_16005 cspA Major cold shock protein — —
Klebsiella michiganensis M5al 0.72 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO 0.63 BWI76_RS10395 cold-shock protein low > 92
Escherichia fergusonii Becca 0.72 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO 0.61 EFB2_00251 Cold shock protein CspA low > 86
Escherichia coli Nissle 1917 0.72 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO 0.61 ECOLIN_RS20345 RNA chaperone/antiterminator CspA — —
Enterobacter sp. TBS_079 0.71 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO 0.66 MPMX20_02529 Cold shock protein CspA low > 85
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO 0.64 CSW01_14830 cold-shock protein CspA — —
Rhodospirillum rubrum S1H 0.69 Rru_A2811 hypothetical protein (NCBI) 0.51 Rru_A1914 Cold-shock DNA-binding domain protein (NCBI) low > 58
Alteromonas macleodii MIT1002 0.68 MIT1002_01933 Ribosomal protein S12 methylthiotransferase RimO 0.71 MIT1002_01248 Cold shock-like protein CspG low > 70
Bosea sp. OAE506 0.66 ABIE41_RS15895 30S ribosomal protein S12 methylthiotransferase RimO 0.50 ABIE41_RS03585 cold-shock protein low > 77
Magnetospirillum magneticum AMB-1 0.66 AMB_RS15345 30S ribosomal protein S12 methylthiotransferase RimO 0.46 AMB_RS08040 cold-shock protein low > 64
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO 0.63 RALBFv3_RS23260 cold-shock protein — —
Ralstonia solanacearum UW163 0.65 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO 0.63 UW163_RS16510 cold-shock protein — —
Ralstonia solanacearum GMI1000 0.65 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO 0.64 RS_RS17205 cold-shock protein low > 80
Ralstonia solanacearum PSI07 0.65 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO 0.64 RPSI07_RS00010 cold-shock protein — —
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO 0.64 ABZR87_RS19675 cold-shock protein low > 80
Shewanella amazonensis SB2B 0.65 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.64 Sama_2963 cold-shock DNA-binding domain-containing protein (RefSeq) low > 62
Dechlorosoma suillum PS 0.65 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO 0.67 Dsui_2659 cold shock protein low > 51
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO 0.65 BPHYT_RS33480 cold-shock protein — —
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO 0.66 QEN71_RS39145 cold-shock protein — —
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07640 ribosomal protein S12 methylthiotransferase 0.66 RR42_RS37535 cold-shock protein — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase 0.64 H281DRAFT_01154 cold-shock DNA-binding protein family — —
Shewanella oneidensis MR-1 0.63 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.64 SO1648 cold shock domain family protein (NCBI ptt file) low > 76
Paraburkholderia graminis OAS925 0.63 ABIE53_002068 ribosomal protein S12 methylthiotransferase 0.64 ABIE53_002280 CspA family cold shock protein — —
Sphingomonas koreensis DSMZ 15582 0.62 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO 0.49 Ga0059261_3800 Cold shock proteins low > 68
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 0.64 HSERO_RS15195 cold-shock protein — —
Dinoroseobacter shibae DFL-12 0.62 Dshi_2618 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.50 Dshi_2219 cold-shock DNA-binding domain protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.59 PGA1_c24370 ribosomal protein S12 methylthiotransferase RimO 0.49 PGA1_c26780 cold shock protein CspA low > 62

Not shown: 35 genomes with orthologs for AO353_16875 only; 5 genomes with orthologs for AO353_20865 only