Conservation of cofitness between Shew_3474 and Shew_2196 in Shewanella loihica PV-4

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 1.0 Shew_2196 helicase c2 (RefSeq) 0.70 11
Shewanella oneidensis MR-1 0.83 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.64 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.82 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.64 Shewana3_1859 helicase c2 (RefSeq) low > 73
Shewanella amazonensis SB2B 0.77 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.57 Sama_1940 ATP-dependent helicase DinG (RefSeq) 0.80 2
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01045 DNA helicase RecQ 0.41 CSW01_09930 ATP-dependent DNA helicase low > 62
Pectobacterium carotovorum WPP14 0.59 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.41 HER17_RS11290 ATP-dependent DNA helicase low > 75
Pantoea sp. MT58 0.58 IAI47_18360 ATP-dependent DNA helicase RecQ 0.41 IAI47_08820 ATP-dependent DNA helicase low > 76
Klebsiella pneumoniae MKP103 0.58 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.40 KDGMDA_25135 ATP-dependent helicase low > 95
Dickeya dianthicola ME23 0.58 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.41 DZA65_RS11620 ATP-dependent DNA helicase low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.41 HGI48_RS11275 ATP-dependent DNA helicase low > 71
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.41 EX28DRAFT_0750 Rad3-related DNA helicases low > 76
Enterobacter sp. TBS_079 0.58 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.41 MPMX20_02714 putative ATP-dependent DNA helicase YoaA low > 85
Pantoea agglomerans CFBP13505 P0401 0.58 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.40 PagCFBP13505_RS02655 ATP-dependent DNA helicase low > 74
Klebsiella michiganensis M5al 0.58 BWI76_RS01245 DNA helicase RecQ 0.40 BWI76_RS17815 ATP-dependent helicase low > 92
Dickeya dadantii 3937 0.58 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.42 DDA3937_RS11240 ATP-dependent DNA helicase low > 74
Escherichia coli ECRC101 0.57 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.42 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.42 OHPLBJKB_01925 putative ATP-dependent helicase DinG low > 74
Escherichia coli ECRC100 0.57 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.42 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA low > 79
Escherichia coli ECRC62 0.57 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.42 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA low > 75
Escherichia fergusonii Becca 0.57 EFB2_04815 ATP-dependent DNA helicase RecQ 0.42 EFB2_02192 putative ATP-dependent DNA helicase YoaA low > 86
Escherichia coli ECOR27 0.57 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.42 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA low > 76
Escherichia coli ECOR38 0.57 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.42 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA low > 88
Escherichia coli ECRC98 0.57 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.42 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA low > 87
Escherichia coli ECRC99 0.57 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.42 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA — —
Escherichia coli ECRC102 0.57 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.42 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA low > 80
Serratia liquefaciens MT49 0.57 IAI46_00770 ATP-dependent DNA helicase RecQ 0.41 IAI46_14550 ATP-dependent DNA helicase low > 87
Escherichia coli Nissle 1917 0.57 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.42 ECOLIN_RS10055 ATP-dependent DNA helicase — —
Escherichia coli BW25113 0.57 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.42 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) low > 76
Escherichia coli BL21 0.57 ECD_03701 ATP-dependent DNA helicase 0.42 ECD_01778 putative ATP-dependent helicase, DinG family — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF248 ATP-dependent DNA helicase RecQ 0.41 GFF2823 DinG family ATP-dependent helicase YoaA low > 78
Erwinia amylovora T8 0.56 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.40 OLJFJH_13085 ATP-dependent helicase low > 58
Erwinia tracheiphila SCR3 0.56 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.39 LU632_RS13150 ATP-dependent DNA helicase low > 73
Rahnella sp. WP5 0.56 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.41 EX31_RS10615 ATP-dependent DNA helicase low > 89
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.39 IJEDHG_22440 ATP-dependent helicase low > 61
Alteromonas macleodii MIT1002 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.41 MIT1002_02593 putative ATP-dependent helicase DinG low > 70
Rhodanobacter denitrificans MT42 0.45 LRK55_RS12700 DNA helicase RecQ 0.33 LRK55_RS12465 ATP-dependent DNA helicase low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS13000 DNA helicase RecQ 0.33 LRK54_RS12765 ATP-dependent DNA helicase low > 59
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_02375 recQ DNA helicase RecQ 0.33 OKGIIK_02195 dinG helicase low > 53
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.34 ABZR86_RS19750 ATP-dependent DNA helicase low > 74
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS15600 DNA helicase RecQ 0.34 LRK53_RS15830 ATP-dependent DNA helicase low > 59
Methylophilus sp. DMC18 0.43 GFF2139 ATP-dependent DNA helicase RecQ 0.34 GFF2564 putative ATP-dependent DNA helicase YoaA low > 43
Lysobacter sp. OAE881 0.43 ABIE51_RS05145 DNA helicase RecQ 0.31 ABIE51_RS05195 ATP-dependent DNA helicase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.31 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA low > 74
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.17 ABIE53_002724 ATP-dependent DNA helicase DinG low > 113
Dechlorosoma suillum PS 0.42 Dsui_3092 ATP-dependent DNA helicase RecQ 0.34 Dsui_2149 DNA helicase, Rad3 low > 51
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.35 RR42_RS07580 helicase 0.52 9
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.32 QEN71_RS06060 ATP-dependent DNA helicase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.32 H281DRAFT_00533 ATP-dependent DNA helicase DinG — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.33 BPHYT_RS12495 helicase low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.34 ABZR87_RS13325 ATP-dependent DNA helicase low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.35 RS_RS08195 ATP-dependent DNA helicase low > 80
Variovorax sp. OAS795 0.41 ABID97_RS03395 DNA helicase RecQ 0.28 ABID97_RS14180 ATP-dependent DNA helicase low > 91
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.34 RPSI07_RS15960 ATP-dependent DNA helicase — —
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.34 UW163_RS14840 ATP-dependent DNA helicase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.34 RALBFv3_RS01530 ATP-dependent DNA helicase low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.24 GFF4872 DinG family ATP-dependent helicase YoaA low > 90
Castellaniella sp019104865 MT123 0.40 ABCV34_RS07985 DNA helicase RecQ 0.30 ABCV34_RS01875 ATP-dependent DNA helicase low > 48
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.30 Ac3H11_2460 DinG family ATP-dependent helicase YoaA low > 79

Not shown: 56 genomes with orthologs for Shew_3474 only; 3 genomes with orthologs for Shew_2196 only