Conservation of cofitness between BT0486 and BT4105 in Bacteroides thetaiotaomicron VPI-5482

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT0486 altronate hydrolase (NCBI ptt file) 1.0 BT4105 D-galacturonate transporter ExuT (from data) 0.81 1
Bacteroides ovatus ATCC 8483 0.97 BACOVA_03832 SAF domain protein 0.95 BACOVA_04896 transporter, major facilitator family protein 0.74 6
Bacteroides stercoris CC31F 0.92 HMPREF1181_RS15455 altronate dehydratase 0.63 HMPREF1181_RS08950 MFS transporter 0.96 3
Phocaeicola vulgatus CL09T03C04 0.88 HMPREF1058_RS01700 altronate dehydratase 0.62 HMPREF1058_RS13515 MFS transporter 0.87 3
Phocaeicola dorei CL03T12C01 0.87 ABI39_RS15365 altronate dehydratase 0.62 ABI39_RS09040 MFS transporter 0.91 3
Parabacteroides merdae CL09T00C40 0.73 HMPREF1078_RS05900 altronate dehydratase family protein 0.80 HMPREF1078_RS17785 MFS transporter low > 61
Pectobacterium carotovorum WPP14 0.59 HER17_RS18705 altronate dehydratase family protein 0.16 HER17_RS18720 MFS transporter low > 75
Rahnella sp. WP5 0.58 EX31_RS12685 altronate dehydratase 0.15 EX31_RS12670 MFS transporter low > 89
Dickeya dianthicola ME23 0.58 DZA65_RS02980 altronate dehydratase 0.15 DZA65_RS02950 MFS transporter low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS02810 altronate dehydratase 0.16 HGI48_RS02795 MFS transporter low > 71
Pantoea sp. MT58 0.58 IAI47_02920 altronate dehydratase 0.15 IAI47_02905 MFS transporter low > 76
Dickeya dadantii 3937 0.58 DDA3937_RS02835 altronate dehydratase 0.16 DDA3937_RS02820 MFS transporter low > 74
Serratia liquefaciens MT49 0.58 IAI46_22215 altronate dehydratase 0.15 IAI46_22225 MFS transporter low > 86
Escherichia fergusonii Becca 0.57 EFB2_00721 Altronate dehydratase 0.15 EFB2_00719 Hexuronate transporter low > 86
Escherichia coli Nissle 1917 0.57 ECOLIN_RS17825 altronate dehydratase 0.15 ECOLIN_RS17835 hexuronate transporter ExuT low > 52
Enterobacter sp. TBS_079 0.57 MPMX20_04000 Altronate dehydratase 0.16 MPMX20_04002 Hexuronate transporter low > 85
Klebsiella michiganensis M5al 0.57 BWI76_RS24725 altronate hydrolase 0.15 BWI76_RS24735 MFS transporter low > 92
Escherichia coli ECOR27 0.57 NOLOHH_10325 uxaA altronate dehydratase 0.16 NOLOHH_10315 exuT hexuronate transporter ExuT low > 57
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3159 Altronate dehydratase 0.16 EX28DRAFT_3161 D-galactonate transporter low > 76
Escherichia coli ECRC62 0.57 BNILDI_01190 uxaA altronate dehydratase 0.16 BNILDI_01200 exuT hexuronate transporter ExuT — —
Escherichia coli ECRC99 0.56 KEDOAH_09620 uxaA altronate dehydratase 0.15 KEDOAH_09630 exuT hexuronate transporter ExuT — —
Escherichia coli BL21 0.56 ECD_02960 altronate hydrolase 0.16 ECD_02962 hexuronate transporter low > 60
Escherichia coli ECRC98 0.56 JDDGAC_22160 uxaA altronate dehydratase 0.15 JDDGAC_22150 exuT hexuronate transporter ExuT — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00611 Altronate dehydratase 0.15 OHPLBJKB_00609 Hexuronate transporter low > 73
Escherichia coli ECRC101 0.56 OKFHMN_18525 uxaA altronate dehydratase 0.15 OKFHMN_18515 exuT hexuronate transporter ExuT — —
Escherichia coli ECOR38 0.56 HEPCGN_17380 uxaA altronate dehydratase 0.15 HEPCGN_17370 exuT hexuronate transporter ExuT low > 85
Escherichia coli ECRC102 0.56 NIAGMN_16290 uxaA altronate dehydratase 0.15 NIAGMN_16280 exuT hexuronate transporter ExuT — —
Escherichia coli ECRC101 0.56 MCAODC_09040 uxaA altronate dehydratase 0.15 MCAODC_09030 exuT hexuronate transporter ExuT — —
Azospirillum brasilense Sp245 0.48 AZOBR_RS16155 altronate hydrolase 0.14 AZOBR_RS23835 hexuronate transporter ExuT low > 97
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_01555 altronate dehydratase 0.26 CCNA_01576 major facilitator superfamily transporter low > 67
Caulobacter crescentus NA1000 0.47 CCNA_01555 altronate dehydratase 0.26 CCNA_01576 major facilitator superfamily transporter low > 66
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_2974 Altronate dehydratase 0.25 Ga0059261_2977 Sugar phosphate permease low > 68
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_24195 galactonate dehydratase 0.23 AO356_15575 hypothetical protein low > 104
Ralstonia sp. UNC404CL21Col 0.29 ABZR87_RS12005 altronate dehydratase family protein 0.16 ABZR87_RS20305 MFS transporter low > 80
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS10490 UxaA family hydrolase 0.30 ABZR88_RS16200 MFS transporter low > 71
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS27220 galactarate dehydratase 0.27 BPHYT_RS31135 hexuranate MFS transporter — —
Pseudomonas putida KT2440 0.28 PP_2834 Putative D-galactarate dehydratase/Altronate dehydratase 0.23 PP_2604 major facilitator family transporter low > 96
Azospirillum sp. SherDot2 0.27 MPMX19_03307 Galactarate dehydratase (L-threo-forming) 0.26 MPMX19_03992 Hexuronate transporter low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS07735 altronate dehydratase family protein 0.27 A4249_RS07640 MFS transporter low > 48
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS11450 altronate dehydratase family protein 0.29 QEN71_RS37700 MFS transporter low > 153
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_3632 Altronate dehydratase 0.22 Echvi_3106 Sugar phosphate permease low > 79
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS00275 galactarate dehydratase 0.14 RR42_RS11305 hexuronate transporter low > 128
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_860 Altronate dehydratase (EC 4.2.1.7) 0.23 Pf6N2E2_5056 Hexuronate transporter low > 103
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_00666 altronate hydrolase 0.30 H281DRAFT_03828 MFS transporter, ACS family, hexuronate transporter low > 103
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_5042 D-galactarate dehydratase (EC 4.2.1.42) 0.23 PfGW456L13_1423 Hexuronate transporter low > 87
Pseudomonas sp. RS175 0.26 PFR28_00145 Galactarate dehydratase (L-threo-forming) 0.23 PFR28_03815 Hexuronate transporter low > 88
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS19875 Altronate dehydratase (EC 4.2.1.7) (from data) 0.58 CA265_RS19855 D-galacturonate transporter ExuT (from data) 0.92 1
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_1107 D-galactarate dehydratase (EC 4.2.1.42) 0.43 Pf1N1B4_5129 D-galacturonate transporter ExuT (from data) low > 87
Ralstonia solanacearum UW163 0.26 UW163_RS16865 altronate dehydratase 0.21 UW163_RS21695 MFS transporter — —
Ralstonia solanacearum IBSBF1503 0.26 RALBFv3_RS16130 altronate dehydratase 0.21 RALBFv3_RS17455 MFS transporter 0.36 39
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_05290 galactarate dehydratase 0.23 AO353_06195 hypothetical protein low > 101
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF1534 D-galactarate dehydratase (EC 4.2.1.42) 0.17 GFF3092 Hexuronate transporter low > 78
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS19355 galactarate dehydratase 0.15 HSERO_RS23010 D-galacturonate transporter ExuT (from data) low > 78
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS04250 galactarate dehydratase 0.44 PFLU_RS16770 MFS transporter low > 109
Pseudomonas fluorescens SBW25 0.25 PFLU_RS04250 galactarate dehydratase 0.44 PFLU_RS16770 MFS transporter low > 109
Ralstonia solanacearum PSI07 0.25 RPSI07_RS03485 galactarate dehydratase 0.22 RPSI07_RS06195 MFS transporter 0.40 12
Pseudomonas simiae WCS417 0.25 PS417_04210 Galactarate dehydratase (EC 4.2.1.42) (from data) 0.44 PS417_14775 major facilitator transporter 0.17 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4225 galactarate dehydratase 0.22 Psyr_2129 Major facilitator superfamily low > 86
Paraburkholderia graminis OAS925 0.25 ABIE53_006505 galactarate dehydratase 0.30 ABIE53_003984 ACS family hexuronate transporter-like MFS transporter low > 113
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4225 galactarate dehydratase 0.22 Psyr_2129 Major facilitator superfamily low > 86
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.1206.1 D-galactarate dehydratase (EC 4.2.1.42) 0.29 Xcc-8004.5239.1 Hexuronate transporter low > 74

Not shown: 14 genomes with orthologs for BT0486 only; 3 genomes with orthologs for BT4105 only