Conservation of cofitness between b4239 and b2935 in Escherichia coli BW25113

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4239 treC trehalose-6-P hydrolase (NCBI) 1.0 b2935 tktA transketolase 1, thiamin-binding (NCBI) 0.38 2
Escherichia coli ECOR38 0.99 HEPCGN_10095 treC alpha,alpha-phosphotrehalase 1.00 HEPCGN_18630 tkt transketolase 0.85 48
Escherichia coli ECRC62 0.99 BNILDI_07345 treC alpha,alpha-phosphotrehalase 1.00 BNILDI_09775 tkt transketolase
Escherichia coli ECOR27 0.99 NOLOHH_04165 treC alpha,alpha-phosphotrehalase 1.00 NOLOHH_11230 tkt transketolase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03796 Trehalose-6-phosphate hydrolase 1.00 OHPLBJKB_00781 Transketolase 1
Escherichia coli BL21 0.99 ECD_04107 trehalose-6-P hydrolase 1.00 ECD_02765 transketolase 1, thiamine triphosphate-binding low > 60
Escherichia coli ECRC99 0.99 KEDOAH_16255 treC alpha,alpha-phosphotrehalase 1.00 KEDOAH_08815 tkt transketolase
Escherichia coli ECRC101 0.99 MCAODC_02405 treC alpha,alpha-phosphotrehalase 1.00 MCAODC_09845 tkt transketolase
Escherichia coli ECRC101 0.99 OKFHMN_11900 treC alpha,alpha-phosphotrehalase 1.00 OKFHMN_19325 tkt transketolase
Escherichia coli ECRC102 0.99 NIAGMN_09750 treC alpha,alpha-phosphotrehalase 1.00 NIAGMN_17090 tkt transketolase
Escherichia coli ECRC98 0.98 JDDGAC_15540 treC alpha,alpha-phosphotrehalase 1.00 JDDGAC_22955 tkt transketolase
Escherichia coli Nissle 1917 0.98 ECOLIN_RS24595 alpha,alpha-phosphotrehalase 0.99 ECOLIN_RS16330 transketolase low > 52
Escherichia fergusonii Becca 0.98 EFB2_04294 Trehalose-6-phosphate hydrolase 1.00 EFB2_00966 Transketolase 1 low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF921 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) 0.97 GFF3028 Transketolase (EC 2.2.1.1) 0.47 26
Klebsiella michiganensis M5al 0.85 BWI76_RS02960 glucohydrolase 0.97 BWI76_RS24015 transketolase
Enterobacter sp. TBS_079 0.82 MPMX20_00537 Trehalose-6-phosphate hydrolase 0.97 MPMX20_03780 Transketolase 1 low > 85
Enterobacter asburiae PDN3 0.82 EX28DRAFT_3438 alpha,alpha-phosphotrehalase 0.96 EX28DRAFT_2974 transketolase, bacterial and yeast low > 76
Serratia liquefaciens MT49 0.74 IAI46_02150 alpha,alpha-phosphotrehalase 0.86 IAI46_21045 transketolase
Erwinia tracheiphila SCR3 0.71 LU632_RS20965 alpha,alpha-phosphotrehalase 0.88 LU632_RS05520 tkt transketolase low > 74
Pectobacterium carotovorum WPP14 0.71 HER17_RS07195 alpha,alpha-phosphotrehalase 0.87 HER17_RS02680 transketolase low > 75
Rahnella sp. WP5 0.68 EX31_RS08390 alpha,alpha-phosphotrehalase 0.84 EX31_RS21400 transketolase low > 89
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_04665 alpha,alpha-phosphotrehalase 0.82 CSW01_02515 transketolase
Pseudomonas simiae WCS417 0.53 PS417_23045 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) 0.75 PS417_26440 transketolase
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_15985 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) 0.75 AO353_07955 transketolase
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS24710 alpha,alpha-phosphotrehalase 0.75 PFLU_RS28095 transketolase
Pseudomonas fluorescens SBW25 0.52 PFLU_RS24710 alpha,alpha-phosphotrehalase 0.75 PFLU_RS28095 transketolase
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_835 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) 0.74 Pf1N1B4_2397 Transketolase (EC 2.2.1.1)
Rhizobium sp. OAE497 0.41 ABIE40_RS29140 alpha-glucosidase 0.45 ABIE40_RS15865 transketolase
Azospirillum brasilense Sp245 0.30 AZOBR_RS25735 alpha-amylase 0.47 AZOBR_RS09010 transketolase
Variovorax sp. OAS795 0.29 ABID97_RS12090 alpha-amylase family glycosyl hydrolase 0.58 ABID97_RS02445 transketolase
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS19395 alpha-amylase family glycosyl hydrolase 0.64 QEN71_RS27010 transketolase
Rhodopseudomonas palustris CGA009 0.28 TX73_024730 alpha-amylase family glycosyl hydrolase 0.49 TX73_024110 transketolase 0.26 51
Pseudomonas sp. RS175 0.28 PFR28_01852 Oligo-1,6-glucosidase 1 0.74 PFR28_04188 Transketolase 1
Pseudomonas stutzeri RCH2 0.28 Psest_3785 Glycosidases 0.75 Psest_0328 transketolase, bacterial and yeast
Lysobacter sp. OAE881 0.27 ABIE51_RS18995 alpha-glucosidase family protein 0.66 ABIE51_RS17120 transketolase
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02777 alpha-glucosidase 0.64 H281DRAFT_06314 transketolase
Xanthomonas campestris pv. campestris strain 8004 0.26 Xcc-8004.2057.1 Maltodextrin glucosidase (EC 3.2.1.20) 0.64 Xcc-8004.1180.1 Transketolase (EC 2.2.1.1)
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_1580 Glycosidases 0.48 Ga0059261_0731 transketolase, bacterial and yeast
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS16975 alpha-glucosidase 0.67 ABZR86_RS18655 transketolase low > 74
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_02445 amyA alpha-glucosidase 0.67 OKGIIK_01095 tkt transketolase low > 52
Shewanella loihica PV-4 0.26 Shew_1889 alpha amylase, catalytic region (RefSeq) 0.77 Shew_0752 transketolase (RefSeq)
Rhodanobacter denitrificans MT42 0.26 LRK55_RS12785 alpha-glucosidase family protein 0.68 LRK55_RS05505 transketolase low > 63
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS09955 alpha-amylase family glycosyl hydrolase 0.43 A4249_RS00780 transketolase
Caulobacter crescentus NA1000 0.26 CCNA_02368 alpha-glucosidase 0.44 CCNA_03735 transketolase
Agrobacterium fabrum C58 0.26 Atu0594 alpha-glucosidase 0.45 Atu3736 transketolase
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_02368 alpha-glucosidase 0.44 CCNA_03735 transketolase
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS13085 alpha-glucosidase family protein 0.68 LRK54_RS05750 transketolase
Shewanella sp. ANA-3 0.26 Shewana3_2311 Alpha-glucosidase (EC 3.2.1.20) (from data) 0.77 Shewana3_3353 transketolase (RefSeq)
Shewanella amazonensis SB2B 0.26 Sama_1662 alpha amylase, catalytic region (RefSeq) 0.78 Sama_2759 transketolase (RefSeq)
Shewanella oneidensis MR-1 0.25 SO2213 oligo-1,6-glucosidase (NCBI ptt file) 0.76 SO0930 tkt transketolase (NCBI ptt file)
Phaeobacter inhibens DSM 17395 0.25 PGA1_c07890 cytoplasmic trehalase (AlgA) (from data) 0.42 PGA1_c17230 transketolase TktA
Rhodospirillum rubrum S1H 0.25 Rru_A2294 Alpha amylase, catalytic region (NCBI) 0.57 Rru_A2405 transketolase (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.23 Dshi_1649 alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) (from data) 0.44 Dshi_1738 transketolase (RefSeq)
Variovorax sp. SCN45 0.22 GFF6332 Maltodextrin glucosidase (EC 3.2.1.20) 0.59 GFF7176 Transketolase (EC 2.2.1.1)

Not shown: 5 genomes with orthologs for b4239 only; 35 genomes with orthologs for b2935 only