Conservation of cofitness between b1301 and b1297 in Escherichia coli BW25113

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1301 puuB gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) 1.0 b1297 b1297 putative glutamine synthetase (EC 6.3.1.2) (VIMSS) 0.61 1
Escherichia coli BL21 1.00 ECD_01278 gamma-glutamylputrescine oxidoreductase 1.00 ECD_01274 glutamate--putrescine ligase low > 60
Escherichia coli ECOR27 1.00 NOLOHH_20110 puuB gamma-glutamylputrescine oxidase 1.00 NOLOHH_20130 puuA glutamate-putrescine ligase — —
Escherichia coli ECRC62 1.00 BNILDI_18260 puuB gamma-glutamylputrescine oxidase 1.00 BNILDI_18280 puuA glutamate-putrescine ligase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02381 Gamma-glutamylputrescine oxidoreductase 0.99 OHPLBJKB_02385 Gamma-glutamylputrescine synthetase PuuA low > 73
Escherichia coli ECOR38 1.00 HEPCGN_25775 puuB gamma-glutamylputrescine oxidase 1.00 HEPCGN_25755 puuA glutamate-putrescine ligase low > 85
Escherichia coli ECRC98 0.99 JDDGAC_04970 puuB gamma-glutamylputrescine oxidase 1.00 JDDGAC_04990 puuA glutamate-putrescine ligase — —
Escherichia coli ECRC99 0.99 KEDOAH_26350 puuB gamma-glutamylputrescine oxidase 1.00 KEDOAH_26330 puuA glutamate-putrescine ligase — —
Escherichia coli ECRC101 0.99 MCAODC_15845 puuB gamma-glutamylputrescine oxidase 1.00 MCAODC_15825 puuA glutamate-putrescine ligase — —
Escherichia coli ECRC102 0.99 NIAGMN_26595 puuB gamma-glutamylputrescine oxidase 1.00 NIAGMN_26615 puuA glutamate-putrescine ligase — —
Escherichia coli ECRC101 0.99 OKFHMN_02425 puuB gamma-glutamylputrescine oxidase 1.00 OKFHMN_02445 puuA glutamate-putrescine ligase — —
Klebsiella michiganensis M5al 0.90 BWI76_RS10690 gamma-glutamylputrescine oxidoreductase 0.95 BWI76_RS10710 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) 0.33 3
Enterobacter asburiae PDN3 0.89 EX28DRAFT_1502 Glycine/D-amino acid oxidases (deaminating) 0.93 EX28DRAFT_1498 Glutamine synthetase low > 76
Serratia liquefaciens MT49 0.82 IAI46_10540 FAD-binding oxidoreductase 0.83 IAI46_10560 glutamine synthetase low > 86
Pantoea sp. MT58 0.73 IAI47_07110 FAD-binding oxidoreductase 0.74 IAI47_07125 glutamine synthetase low > 76
Rahnella sp. WP5 0.72 EX31_RS17910 FAD-binding oxidoreductase 0.76 EX31_RS17895 glutamine synthetase low > 89
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_4356 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) 0.40 Pf1N1B4_4354 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) low > 87
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_29290 gamma-glutamylputrescine oxidoreductase 0.40 AO353_29300 gamma-glutamylputrescine synthetase low > 101
Shewanella sp. ANA-3 0.69 Shewana3_3093 FAD dependent oxidoreductase (RefSeq) 0.25 Shewana3_3098 L-glutamine synthetase (RefSeq) 0.60 5
Shewanella oneidensis MR-1 0.68 SO1274 conserved hypothetical protein (NCBI ptt file) 0.24 SO1268 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) 0.81 2
Pseudomonas simiae WCS417 0.67 PS417_18505 gamma-glutamylputrescine oxidoreductase 0.39 PS417_27140 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) 0.25 3
Shewanella amazonensis SB2B 0.67 Sama_2638 putative oxidoreductase (RefSeq) 0.30 Sama_1174 glutamate--ammonia ligase (RefSeq) low > 62
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS20485 FAD-binding oxidoreductase 0.39 PFLU_RS28795 glutamine synthetase 0.55 9
Pseudomonas fluorescens SBW25 0.67 PFLU_RS20485 FAD-binding oxidoreductase 0.39 PFLU_RS28795 glutamine synthetase low > 109
Pseudomonas putida KT2440 0.66 PP_2448 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) 0.40 PP_5299 glutamate-putrescine ligase low > 96
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_21495 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) 0.39 AO356_13135 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) 0.85 7
Pseudomonas sp. S08-1 0.65 OH686_22830 Gamma-glutamyl-putrescine oxidase 0.40 OH686_11485 glutamine synthetase family protein low > 80
Pseudomonas stutzeri RCH2 0.65 Psest_1966 Glycine/D-amino acid oxidases (deaminating) 0.40 Psest_4288 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) low > 67
Shewanella loihica PV-4 0.65 Shew_0977 FAD dependent oxidoreductase (RefSeq) 0.24 Shew_0972 glutamate--ammonia ligase (RefSeq) low > 60
Pseudomonas sp. RS175 0.64 PFR28_02805 Gamma-glutamylputrescine oxidoreductase 0.40 PFR28_04298 Gamma-glutamylputrescine synthetase PuuA 0.49 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_2427 gamma-glutamylputrescine oxidase 0.39 Psyr_4868 glutamate--putrescine ligase low > 86
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_3923 Nucleoside-diphosphate-sugar epimerases 0.39 PfGW456L13_925 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) low > 87
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_2427 gamma-glutamylputrescine oxidase 0.39 Psyr_4868 glutamate--putrescine ligase low > 86
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_80 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) 0.37 Pf6N2E2_4509 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) 0.75 5
Marinobacter adhaerens HP15 0.61 HP15_944 FAD dependent oxidoreductase 0.40 HP15_942 glutamate-putrescine ligase low > 73
Agrobacterium fabrum C58 0.53 Atu0194 oxidoreductase 0.32 Atu0193 glutamine synthetase low > 89
Sinorhizobium meliloti 1021 0.51 SMc01972 oxidoreductase 0.30 SMc01973 glutamine synthetase low > 103
Azospirillum brasilense Sp245 0.43 AZOBR_RS08855 FAD-dependent oxidoreductase 0.25 AZOBR_RS08850 glutamine synthetase low > 97
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS23125 FAD-dependent oxidoreductase 0.25 BPHYT_RS23160 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) low > 109
Azospirillum sp. SherDot2 0.40 MPMX19_04887 Gamma-glutamylputrescine oxidoreductase 0.25 MPMX19_04886 Gamma-glutamylputrescine synthetase PuuA low > 112
Paraburkholderia graminis OAS925 0.39 ABIE53_001806 gamma-glutamylputrescine oxidase 0.25 ABIE53_002230 glutamine synthetase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF2043 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster 0.23 GFF2037 glutamine synthetase family protein 0.75 7
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS12970 FAD-binding oxidoreductase 0.25 QEN71_RS12935 glutamine synthetase family protein low > 153
Rhodospirillum rubrum S1H 0.37 Rru_A1019 FAD dependent oxidoreductase (NCBI) 0.28 Rru_A1253 Glutamine synthetase, catalytic region (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11510 gamma-glutamylputrescine oxidoreductase PuuB 0.27 PGA1_c11540 gamma-glutamylputrescine synthetase PuuA low > 62
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.2201.1 glutamine synthetase family protein 0.36 Xcc-8004.2202.1 glutamine synthetase family protein low > 74
Dinoroseobacter shibae DFL-12 0.33 Dshi_2227 FAD dependent oxidoreductase (RefSeq) 0.26 Dshi_2226 Glutamate--putrescine ligase (RefSeq) low > 64
Rhizobium sp. OAE497 0.28 ABIE40_RS03205 FAD-binding oxidoreductase 0.28 ABIE40_RS05855 glutamine synthetase family protein low > 107
Caulobacter crescentus NA1000 0.28 CCNA_03229 FAD dependent oxidoreductase 0.33 CCNA_03240 glutamine synthetase 0.92 1
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_03229 FAD dependent oxidoreductase 0.33 CCNA_03240 glutamine synthetase low > 67
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_03219 gamma-glutamylputrescine oxidase 0.25 H281DRAFT_01081 L-glutamine synthetase low > 103
Acinetobacter radioresistens SK82 0.24 MPMX26_02004 Gamma-glutamylputrescine oxidoreductase 0.42 MPMX26_02239 Gamma-glutamylputrescine synthetase PuuA — —
Rhodopseudomonas palustris CGA009 0.22 TX73_013660 FAD-dependent oxidoreductase 0.17 TX73_007190 glutamine synthetase family protein low > 86

Not shown: 23 genomes with orthologs for b1301 only; 4 genomes with orthologs for b1297 only