| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A3229 | | Two Component Transcriptional Regulator, LuxR family (NCBI) | 1.0 | Rru_A3437 | | Aminoglycoside phosphotransferase (NCBI) | 0.60 | 4 |
| Magnetospirillum magneticum AMB-1 | 0.55 | AMB_RS19675 | | DNA-binding response regulator | 0.50 | AMB_RS21475 | | aminoglycoside phosphotransferase | — | — |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS20235 | | transcriptional regulator | 0.36 | AZOBR_RS00580 | | aminoglycoside phosphotransferase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.41 | MPMX19_04898 | | Transcriptional regulatory protein LnrK | 0.35 | MPMX19_02725 | | N-acetylmuramate/N-acetylglucosamine kinase | low | > 112 |
| Dyella japonica UNC79MFTsu3.2 | 0.37 | ABZR86_RS19300 | | response regulator transcription factor | 0.20 | ABZR86_RS09500 | | phosphotransferase | low | > 74 |
| Variovorax sp. SCN45 | 0.33 | GFF5912 | | Two-component transcriptional response regulator, LuxR family, but with unusual receiver domain | 0.21 | GFF3254 | | Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA | low | > 127 |
| Shewanella loihica PV-4 | 0.33 | Shew_1545 | | two component LuxR family transcriptional regulator (RefSeq) | 0.22 | Shew_0883 | | aminoglycoside phosphotransferase (RefSeq) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.32 | H281DRAFT_05306 | | two component transcriptional regulator, LuxR family | 0.19 | H281DRAFT_04636 | | hypothetical protein | low | > 103 |
| Shewanella sp. ANA-3 | 0.32 | Shewana3_1732 | | two component LuxR family transcriptional regulator (RefSeq) | 0.18 | Shewana3_3205 | | aminoglycoside phosphotransferase (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.32 | Sama_2076 | | response regulator receiver protein (RefSeq) | 0.17 | Sama_2815 | | phosphotransferase (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.31 | SO2648 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | 0.19 | SO3635 | | hypothetical phosphotransferase (NCBI ptt file) | low | > 76 |
| Dechlorosoma suillum PS | 0.31 | Dsui_0382 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.24 | Dsui_1588 | | aminoglycoside phosphotransferase | low | > 51 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_2864 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.24 | Psest_3664 | | Predicted phosphotransferase related to Ser/Thr protein kinases | low | > 67 |
| Marinobacter adhaerens HP15 | 0.30 | HP15_812 | | two component transcriptional regulator, LuxR family | 0.23 | HP15_3282 | | aminoglycoside phosphotransferase | — | — |
| Burkholderia phytofirmans PsJN | 0.30 | BPHYT_RS24080 | | LuxR family transcriptional regulator | 0.18 | BPHYT_RS03285 | | aminoglycoside phosphotransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | 0.24 | Psyr_4623 | | Aminoglycoside phosphotransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | 0.24 | Psyr_4623 | | Aminoglycoside phosphotransferase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_28105 | | LuxR family transcriptional regulator | 0.22 | AO356_14355 | | aminoglycoside phosphotransferase | low | > 104 |
| Pseudomonas sp. RS175 | 0.30 | PFR28_01803 | | Transcriptional regulatory protein DegU | 0.22 | PFR28_04060 | | N-acetylmuramate/N-acetylglucosamine kinase | low | > 88 |
| Pseudomonas putida KT2440 | 0.30 | PP_2665 | | Glycerol metabolism activator | 0.21 | PP_0405 | | conserved protein of unknown function | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.30 | Pf6N2E2_1399 | | Transcriptional regulator, LuxR family | 0.22 | Pf6N2E2_4809 | | COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.29 | PfGW456L13_3528 | | Transcriptional regulator, LuxR family | 0.21 | PfGW456L13_1204 | | COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases | low | > 87 |
| Pseudomonas sp. S08-1 | 0.29 | OH686_18240 | | Two-component transcriptional response regulator, LuxR family | 0.23 | OH686_15060 | | Phosphotransferase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_16835 | | LuxR family transcriptional regulator | 0.22 | AO353_07295 | | aminoglycoside phosphotransferase | low | > 101 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS07810 | | response regulator transcription factor | 0.18 | QEN71_RS02110 | | phosphotransferase | low | > 153 |
| Pseudomonas simiae WCS417 | 0.29 | PS417_17505 | | LuxR family transcriptional regulator | 0.22 | PS417_25790 | | aminoglycoside phosphotransferase | low | > 88 |
| Rhodanobacter sp. FW510-T8 | 0.28 | OKGIIK_15195 | | LuxR family transcriptional regulator | 0.19 | OKGIIK_09975 | | Aminoglycoside phosphotransferase | 0.65 | 2 |
| Rhodanobacter denitrificans MT42 | 0.28 | LRK55_RS08190 | | response regulator transcription factor | 0.20 | LRK55_RS02855 | | phosphotransferase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.28 | LRK54_RS08425 | | response regulator transcription factor | 0.20 | LRK54_RS03105 | | phosphotransferase | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_02902 | | Transcriptional activator protein ExaE | 0.22 | MPMX26_01212 | | N-acetylmuramate/N-acetylglucosamine kinase | low | > 36 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_0465 | | two component transcriptional regulator, LuxR family (RefSeq) | 0.26 | Dshi_3435 | | aminoglycoside phosphotransferase (RefSeq) | low | > 64 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS05910 | | response regulator transcription factor | 0.22 | PFLU_RS27445 | | phosphotransferase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS05910 | | response regulator transcription factor | 0.22 | PFLU_RS27445 | | phosphotransferase | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.27 | HSERO_RS06185 | | response regulator protein | 0.24 | HSERO_RS03520 | | aminoglycoside phosphotransferase | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.27 | RS_RS21845 | | DNA-binding response regulator | 0.24 | RS_RS02560 | | aminoglycoside phosphotransferase | low | > 80 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS15200 | | response regulator transcription factor | 0.31 | A4249_RS11275 | | phosphotransferase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_c19640 | | transcriptional regulator, containing response regulator domain | 0.30 | PGA1_c35340 | | putative phosphotransferase | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS14200 | | response regulator transcription factor | 0.23 | ABZR87_RS07690 | | aminoglycoside phosphotransferase family protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS06675 | | DNA-binding response regulator | 0.23 | RPSI07_RS21480 | | aminoglycoside phosphotransferase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS16770 | | DNA-binding response regulator | 0.23 | RALBFv3_RS11735 | | aminoglycoside phosphotransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS18125 | | DNA-binding response regulator | 0.23 | UW163_RS01850 | | aminoglycoside phosphotransferase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.23 | GFF5823 | | Nitrate/nitrite response regulator protein | 0.23 | GFF2463 | | COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases | — | — |
| Kangiella aquimarina DSM 16071 | 0.20 | B158DRAFT_1737 | | two component transcriptional regulator, LuxR family | 0.23 | B158DRAFT_0792 | | Predicted phosphotransferase related to Ser/Thr protein kinases | low | > 40 |
| Castellaniella sp019104865 MT123 | 0.19 | ABCV34_RS08970 | | response regulator transcription factor | 0.23 | ABCV34_RS09505 | | phosphotransferase | low | > 48 |
Not shown: 39 genomes with orthologs for Rru_A3229 only; 4 genomes with orthologs for Rru_A3437 only